RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	LRRC41	Q15345	812 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	CCDC144B	Q3MJ40	725 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	GJC2	Q5T442	439 aa	Predicted RBP	10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	HOMER1	Q86YM7	354 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	MCF2L2	Q86YR7	1114 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	DNER	Q8NFT8	737 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	MORC4	Q8TE76	937 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	TBC1D5	Q92609	795 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	LENG1	Q96BZ8	264 aa	Predicted RBP	10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	JAKMIP1	Q96N16	626 aa	Known RBP	10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	PIGS	Q96S52	555 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	LZTS2	Q9BRK4	669 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	SPZ1	Q9BXG8	430 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	USP26	Q9BXU7	913 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	KATNBL1	Q9H079	304 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	PCDHA1	Q9Y5I3	950 aa		10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	BAZ2B	Q9UIF8	2168 aa	Known RBP	10.67	□□□□□ -0.7
DNMT1-223	ENST00000591239	LCT	P09848	1927 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	MYH6	P13533	1939 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	LOC102724159	A0A0B4J2E5	919 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	KBTBD13	C9JR72	458 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	EVI5	O60447	810 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	DUSP11	O75319	330 aa	Known RBP	10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	PLEKHA8P1	O95397	391 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	PGK1	P00558	417 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	CPA1	P15085	419 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	SMARCA1	P28370	1054 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	ALDH5A1	P51649	535 aa	Predicted RBP	10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	TRAF1	Q13077	416 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	PWP2	Q15269	919 aa	Known RBP	10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	APOA5	Q6Q788	366 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	SYNE3	Q6ZMZ3	975 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	EEPD1	Q7L9B9	569 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	RNF180	Q86T96	592 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	MICU3	Q86XE3	530 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	RAB11FIP4	Q86YS3	637 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	SRBD1	Q8N5C6	995 aa	Known RBP	10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	FANCB	Q8NB91	859 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	PIBF1	Q8WXW3	757 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	CEP290	O15078	2479 aa		10.66	□□□□□ -0.7
DNMT1-223	ENST00000591239	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239		H0YGN5	161 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	OPLAH	O14841	1288 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	ADCY6	O43306	1168 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	CFB	P00751	764 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	PSMA5	P28066	241 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	FGD1	P98174	961 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	TNFAIP2	Q03169	654 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	IQSEC1	Q6DN90	963 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	TAPT1	Q6NXT6	567 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	BLOC1S2	Q6QNY1	142 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	FBXO16	Q8IX29	292 aa	Predicted RBP	10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	CMTR1	Q8N1G2	835 aa	Known RBP	10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	SYTL5	Q8TDW5	730 aa	Predicted RBP	10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	RRP36	Q96EU6	259 aa	Known RBP	10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	MPHOSPH6	Q99547	160 aa	Known RBP	10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	VTA1	Q9NP79	307 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	PDGFC	Q9NRA1	345 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	BRPF3	Q9ULD4	1205 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	NR2E3	Q9Y5X4	410 aa		10.65	□□□□□ -0.7
DNMT1-223	ENST00000591239	SYNRG	Q9UMZ2	1314 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	KLF18	A0A0U1RQI7	1052 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239		B4DLN1	442 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	ZBTB43	O43298	467 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	ADAMTS4	O75173	837 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	CAST	P20810	708 aa	Known RBP	10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	RPS6KB1	P23443	525 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	EDNRB	P24530	442 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	ADCYAP1R1	P41586	468 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	HSD17B4	P51659	736 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	MRPL12	P52815	198 aa	Known RBP	10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	GHRHR	Q02643	423 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	PDE4D	Q08499	809 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	LRRC26	Q2I0M4	334 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239		Q6ZUG5	572 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	TMTC3	Q6ZXV5	915 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	NOL8	Q76FK4	1167 aa	Known RBP	10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	CCDC82	Q8N4S0	544 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	SAMD3	Q8N6K7	520 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	KLHDC9	Q8NEP7	349 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	NSUN6	Q8TEA1	469 aa	Known RBP	10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	TAAR1	Q96RJ0	339 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	RMDN3	Q96TC7	470 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	SPC25	Q9HBM1	224 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	MAP3K20	Q9NYL2	800 aa	Known RBP	10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	COL20A1	Q9P218	1284 aa		10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	SEC63	Q9UGP8	760 aa	Known RBP	10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	LAMA2	P24043	3122 aa	Known RBP	10.64	□□□□□ -0.71
DNMT1-223	ENST00000591239	MYADML2	A6NDP7	307 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	C6orf222	P0C671	652 aa	Predicted RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	SMPD1	P17405	629 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	HOXA13	P31271	388 aa	Predicted RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	ATN1	P54259	1190 aa	Predicted RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	GJA9	P57773	515 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	IRX5	P78411	483 aa	Predicted RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	APOBR	Q0VD83	1088 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	KCNA10	Q16322	511 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	RTN1	Q16799	776 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	ARHGEF16	Q5VV41	709 aa		10.63	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms