RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 PRRX2Q99811 253 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 CLIP2Q9UDT6 1046 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 NOD1Q9Y239 953 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 SCN5AQ14524 2016 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 LINC01553A4QN01 128 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 H3BQ06 376 aaPredicted RBP13.14□□□□□ -0.31
ZNF540-209ENST00000590588 GOLIM4O00461 696 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 KPNA6O60684 536 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 MBD4O95243 580 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 PARNO95453 639 aaKnown RBP13.14□□□□□ -0.31
ZNF540-209ENST00000590588 PTPROQ16827 1216 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 CTR9Q6PD62 1173 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 TMCO2Q7Z6W1 182 aaPredicted RBP13.14□□□□□ -0.31
ZNF540-209ENST00000590588 ADHFE1Q8IWW8 467 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 RPAP2Q8IXW5 612 aaPredicted RBP13.14□□□□□ -0.31
ZNF540-209ENST00000590588 ANKS1AQ92625 1134 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 MKL1Q969V6 931 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 TRERF1Q96PN7 1200 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 WDR11Q9BZH6 1224 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 MKNK2Q9HBH9 465 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 RNF146Q9NTX7 359 aa13.14□□□□□ -0.31
ZNF540-209ENST00000590588 COL4A4P53420 1690 aaPredicted RBP13.13□□□□□ -0.31
ZNF540-209ENST00000590588 ABHD14A-ACY1A0A1B0GW23 586 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 DEFB103AP81534 67 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 PKN1Q16512 942 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 CNKSR3Q6P9H4 555 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 BMP8AQ7Z5Y6 402 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 ERC1Q8IUD2 1116 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 CCDC155Q8N6L0 562 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 FBXO22Q8NEZ5 403 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 CAGE1Q8TC20 777 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 MORC4Q8TE76 937 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 AFAP1L1Q8TED9 768 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 CLUAP1Q96AJ1 413 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 PABPC5Q96DU9 382 aaKnown RBP13.13□□□□□ -0.31
ZNF540-209ENST00000590588 MRPL38Q96DV4 380 aaKnown RBP13.13□□□□□ -0.31
ZNF540-209ENST00000590588 DNAJC2Q99543 621 aaKnown RBP13.13□□□□□ -0.31
ZNF540-209ENST00000590588 SYNPO2Q9UMS6 1093 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 SLC4A4Q9Y6R1 1079 aa13.13□□□□□ -0.31
ZNF540-209ENST00000590588 DDX49Q9Y6V7 483 aaKnown RBP13.13□□□□□ -0.31
ZNF540-209ENST00000590588 EFCAB14O75071 495 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 BMP3P12645 472 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 RASA1P20936 1047 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 IRS1P35568 1242 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 ADD2P35612 726 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 EP400NLQ6ZTU2 488 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 PRSS33Q8NF86 280 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 OR6J1Q8NGC5 347 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 CHURC1Q8WUH1 139 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 FRAT1Q92837 279 aaPredicted RBP13.12□□□□□ -0.31
ZNF540-209ENST00000590588 CYP39A1Q9NYL5 469 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 ARPP21Q9UBL0 812 aaPredicted RBP13.12□□□□□ -0.31
ZNF540-209ENST00000590588 TNNQ9UQP3 1299 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 INSL6Q9Y581 213 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 CFAP54Q96N23 3096 aa13.12□□□□□ -0.31
ZNF540-209ENST00000590588 TMEM232C9JQI7 657 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 ALAS1P13196 640 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 STAT2P52630 851 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 IKBKEQ14164 716 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 GPNMBQ14956 572 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 PTGISQ16647 500 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 TIGD5Q53EQ6 642 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 HERC4Q5GLZ8 1057 aaPredicted RBP13.11□□□□□ -0.31
ZNF540-209ENST00000590588 ZNF444Q8N0Y2 327 aaPredicted RBP13.11□□□□□ -0.31
ZNF540-209ENST00000590588 TMEM57Q8N5G2 664 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 BANK1Q8NDB2 785 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 GMCL1P1Q8NEA9 526 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 POP1Q99575 1024 aaKnown RBP13.11□□□□□ -0.31
ZNF540-209ENST00000590588 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.11□□□□□ -0.31
ZNF540-209ENST00000590588 ADD3Q9UEY8 706 aaKnown RBP13.11□□□□□ -0.31
ZNF540-209ENST00000590588 ZNF318Q5VUA4 2279 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 ZBED9Q6R2W3 1325 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 RAD50Q92878 1312 aa13.11□□□□□ -0.31
ZNF540-209ENST00000590588 TET1Q8NFU7 2136 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 RBM47A0AV96 593 aaKnown RBP13.1□□□□□ -0.31
ZNF540-209ENST00000590588 NKRFO15226 690 aaKnown RBP eCLIP13.1□□□□□ -0.31
ZNF540-209ENST00000590588 NCK2O43639 380 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 GFRA3O60609 400 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 TTLL1O95922 423 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 CXCL10P02778 98 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 SELPP16109 830 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 SLFNL1Q499Z3 407 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 SBK1Q52WX2 424 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 IER5LQ5T953 404 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 SLFN13Q68D06 897 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 LRRC8DQ7L1W4 858 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 FAM160B2Q86V87 743 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 PPP1R13LQ8WUF5 828 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 STAG1Q8WVM7 1258 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 EDAQ92838 391 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 YTHDC1Q96MU7 727 aaKnown RBP13.1□□□□□ -0.31
ZNF540-209ENST00000590588 SAMD11Q96NU1 681 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 C17orf80Q9BSJ5 609 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 C1orf115Q9H7X2 142 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 MTMR4Q9NYA4 1195 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 MUTYHQ9UIF7 546 aa13.1□□□□□ -0.31
ZNF540-209ENST00000590588 BAZ2AQ9UIF9 1905 aaKnown RBP13.09□□□□□ -0.31
ZNF540-209ENST00000590588 LOC102724159A0A0B4J2E5 919 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 IGKV6D-41A0A0C4DH26 115 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 A6NJR5 290 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms