RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ZEB2O60315 1214 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 CABYRO75952 493 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 ELP1O95163 1332 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 ABCB11O95342 1321 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 NEFLP07196 543 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 CYP21A2P08686 494 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 MYH6P13533 1939 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 COL9A1P20849 921 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 SLC4A3P48751 1232 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 MROH7Q68CQ1 1323 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 CCDC174Q6PII3 467 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 ARMCX2Q7L311 632 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 TEX2Q8IWB9 1127 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 TIFAQ96CG3 184 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 TOX2Q96NM4 488 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 HOMER2Q9NSB8 354 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 TMEM39AQ9NV64 488 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 SYNRGQ9UMZ2 1314 aa12.24□□□□□ -0.45
LIG3-212ENST00000590181 NKRFO15226 690 aaKnown RBP eCLIP12.23□□□□□ -0.45
LIG3-212ENST00000590181 TAL1P17542 331 aaPredicted RBP12.23□□□□□ -0.45
LIG3-212ENST00000590181 GJA9P57773 515 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 SEC23AQ15436 765 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 RNF207Q6ZRF8 634 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 CCDC144CPQ8IYA2 1237 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 TMEM87BQ96K49 555 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 IWS1Q96ST2 819 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 LZTS2Q9BRK4 669 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 UPF3AQ9H1J1 476 aaKnown RBP12.23□□□□□ -0.45
LIG3-212ENST00000590181 ZNF576Q9H609 170 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 GPCPD1Q9NPB8 672 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 STARD7Q9NQZ5 370 aa12.23□□□□□ -0.45
LIG3-212ENST00000590181 MRPL11Q9Y3B7 192 aaKnown RBP12.23□□□□□ -0.45
LIG3-212ENST00000590181 MYO9BQ13459 2157 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.22□□□□□ -0.45
LIG3-212ENST00000590181 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.22□□□□□ -0.45
LIG3-212ENST00000590181 E7EWF7 191 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 IFIT3O14879 490 aaKnown RBP12.22□□□□□ -0.45
LIG3-212ENST00000590181 EPB41L2O43491 1005 aaKnown RBP12.22□□□□□ -0.45
LIG3-212ENST00000590181 ADAMTS4O75173 837 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 CALM1P0DP23 149 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 CALM2P0DP24 149 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 CALM3P0DP25 149 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 MCM5P33992 734 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 SLC16A2P36021 539 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 GNAQP50148 359 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 WTAPQ15007 396 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 CCDC144BQ3MJ40 725 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 BRDTQ58F21 947 aaPredicted RBP12.22□□□□□ -0.45
LIG3-212ENST00000590181 TTBK2Q6IQ55 1244 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 NSMFQ6X4W1 530 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 ADGRF4Q8IZF3 695 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 KLHDC9Q8NEP7 349 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 CCDC136Q96JN2 1154 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 GAS2L1Q99501 681 aaPredicted RBP12.22□□□□□ -0.45
LIG3-212ENST00000590181 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.22□□□□□ -0.45
LIG3-212ENST00000590181 ZKSCAN3Q9BRR0 538 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 ESYT1Q9BSJ8 1104 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 THEGQ9P2T0 379 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 MTMR7Q9Y216 660 aa12.22□□□□□ -0.45
LIG3-212ENST00000590181 PALM3A6NDB9 673 aaPredicted RBP12.21□□□□□ -0.45
LIG3-212ENST00000590181 DCDC2CA8MYV0 355 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 KLRF2D3W0D1 207 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 KPNA6O60684 536 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 EIF5BO60841 1220 aaKnown RBP12.21□□□□□ -0.45
LIG3-212ENST00000590181 HMGB1P09429 215 aaKnown RBP12.21□□□□□ -0.45
LIG3-212ENST00000590181 KIF5BP33176 963 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 LIFRP42702 1097 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 ACLYP53396 1101 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 TNFAIP2Q03169 654 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 PTH1RQ03431 593 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 FAAP100Q0VG06 881 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 KRT32Q14532 448 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 TSGA10IPQ3SY00 556 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 ANKRD33Q7Z3H0 272 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 CATIPQ7Z7H3 387 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 FBXO11Q86XK2 927 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 NSUN6Q8TEA1 469 aaKnown RBP12.21□□□□□ -0.45
LIG3-212ENST00000590181 PPM1EQ8WY54 764 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 GLT1D1Q96MS3 346 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 AMNQ9BXJ7 453 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 AP5M1Q9H0R1 490 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 RAPGEFL1Q9UHV5 662 aa12.21□□□□□ -0.45
LIG3-212ENST00000590181 ZHX1Q9UKY1 873 aaPredicted RBP12.21□□□□□ -0.45
LIG3-212ENST00000590181 RBM8AQ9Y5S9 174 aaKnown RBP12.21□□□□□ -0.45
LIG3-212ENST00000590181 FRMPD2Q68DX3 1309 aaPredicted RBP12.2□□□□□ -0.46
LIG3-212ENST00000590181 RBM47A0AV96 593 aaKnown RBP12.2□□□□□ -0.46
LIG3-212ENST00000590181 PTPDC1A2A3K4 754 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 SOWAHBA6NEL2 793 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 ZBTB5O15062 677 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 DDAH1O94760 285 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 RPS6P62753 249 aaKnown RBP12.2□□□□□ -0.46
LIG3-212ENST00000590181 CNTN2Q02246 1040 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 GHRHRQ02643 423 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 PPIGQ13427 754 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIG3-212ENST00000590181 BAATQ14032 418 aaPredicted RBP12.2□□□□□ -0.46
LIG3-212ENST00000590181 NECTIN1Q15223 517 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 CDC37Q16543 378 aaPredicted RBP12.2□□□□□ -0.46
LIG3-212ENST00000590181 MUM1L1Q5H9M0 696 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 CCSAPQ6IQ19 270 aaPredicted RBP12.2□□□□□ -0.46
LIG3-212ENST00000590181 CLEC4DQ8WXI8 215 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms