RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PARP14	Q460N5	1801 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L15	C9J2P7	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L13	C9JLJ4	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L11	C9JVI0	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L18	D6R9N7	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L22	D6RA61	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L17	D6RBQ6	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L19	D6RCP7	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L20	D6RJB6	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	LAD1	O00515	517 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	FOXN1	O15353	648 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	PRPH	P41219	470 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	IRX5	P78411	483 aa	Predicted RBP	17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L24	Q0WX57	530 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	STX1A	Q16623	288 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	USP17L6P	Q6QN14	398 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	C11orf57	Q6ZUT1	292 aa	Predicted RBP	17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	CNNM3	Q8NE01	707 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	KIF18A	Q8NI77	898 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	P2RX7	Q99572	595 aa	Known RBP	17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	GLT8D2	Q9H1C3	349 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	RANBP17	Q9H2T7	1088 aa	Known RBP	17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	KCNF1	Q9H3M0	494 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	FBXO28	Q9NVF7	368 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	SERTAD1	Q9UHV2	236 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	TUBE1	Q9UJT0	475 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	ORC2	Q13416	577 aa	Predicted RBP	17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	USH1G	Q495M9	461 aa		17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	SCYL3	Q8IZE3	742 aa		17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	C17orf53	Q8N3J3	647 aa	Predicted RBP	17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	PDILT	Q8N807	584 aa		17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	ZNF397	Q8NF99	534 aa	Predicted RBP	17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	CHURC1	Q8WUH1	139 aa		17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	ZKSCAN4	Q969J2	545 aa	Predicted RBP	17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	HOOK2	Q96ED9	719 aa		17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	WRNIP1	Q96S55	665 aa		17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	CBX8	Q9HC52	389 aa		17.4	■□□□□ 0.38
DDX39A-209	ENST00000589318	TULP2	O00295	520 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	NEMF	O60524	1076 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	LONP1	P36776	959 aa	Known RBP	17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	PNOC	Q13519	176 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	DGKZ	Q13574	1117 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	FAM160B2	Q86V87	743 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	KLRG1	Q96E93	195 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	FAM53C	Q9NYF3	392 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	FEM1B	Q9UK73	627 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	PYCARD	Q9ULZ3	195 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	LMOD1	P29536	600 aa	Predicted RBP	17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	POTED	Q86YR6	584 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	CCDC112	Q8NEF3	446 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	LPAR1	Q92633	364 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	KIFC2	Q96AC6	838 aa		17.39	■□□□□ 0.37
DDX39A-209	ENST00000589318	WDR46	O15213	610 aa	Known RBP	17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	SLC37A4	O43826	429 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	TDP2	O95551	362 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	OR52Z1	P0C646	297 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	PTPRA	P18433	802 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	ZNF165	P49910	485 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	E2F4	Q16254	413 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	DTHD1	Q6ZMT9	781 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	LUZP1	Q86V48	1076 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	L3MBTL3	Q96JM7	780 aa	Predicted RBP	17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	MTMR9	Q96QG7	549 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	WDR18	Q9BV38	432 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	EMILIN3	Q9NT22	766 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	ANO10	Q9NW15	660 aa		17.38	■□□□□ 0.37
DDX39A-209	ENST00000589318	CAVIN2	O95810	425 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	PRR29	P0C7W0	189 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	MTMR2	Q13614	643 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	PPP4R3A	Q6IN85	833 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	DLK2	Q6UY11	383 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	CRYGN	Q8WXF5	182 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	DHX58	Q96C10	678 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	OTOF	Q9HC10	1997 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	RLF	Q13129	1914 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	CDC25A	P30304	524 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	AP3B2	Q13367	1082 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	IQCB1	Q15051	598 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	POSTN	Q15063	836 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	DPCR1	Q3MIW9	517 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	SH3RF1	Q7Z6J0	888 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	ANO3	Q9BYT9	981 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	PCDHA5	Q9Y5H7	936 aa		17.37	■□□□□ 0.37
DDX39A-209	ENST00000589318	PP2D1	A8MPX8	630 aa		17.36	■□□□□ 0.37
DDX39A-209	ENST00000589318	BIN1	O00499	593 aa		17.36	■□□□□ 0.37
DDX39A-209	ENST00000589318	CCDC174	Q6PII3	467 aa		17.36	■□□□□ 0.37
DDX39A-209	ENST00000589318	GRAMD1C	Q8IYS0	662 aa		17.36	■□□□□ 0.37
DDX39A-209	ENST00000589318	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	17.36	■□□□□ 0.37	3e-14	■□□□□ 9.4
DDX39A-209	ENST00000589318	ZNF536	O15090	1300 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	WDR90	Q96KV7	1748 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	AP5Z1	O43299	807 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	VCAM1	P19320	739 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	NLRP12	P59046	1061 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	SPP2	Q13103	211 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	SUPT20HL1	Q3ZLR7	823 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	NOL9	Q5SY16	702 aa	Known RBP	17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	NT5DC1	Q5TFE4	455 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	SPATA20	Q8TB22	786 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	PIK3CD	O00329	1044 aa		17.35	■□□□□ 0.37

Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms