RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 DCAF15Q66K64 600 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 NFXL1Q6ZNB6 911 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 Q6ZUG5 572 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 CYB5R4Q7L1T6 521 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 CDC37L1Q7L3B6 337 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 USP48Q86UV5 1035 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 SLC9A9Q8IVB4 645 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 HSCBQ8IWL3 235 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 MB21D2Q8IYB1 491 aaPredicted RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 TRIM22Q8IYM9 498 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 PBXIP1Q96AQ6 731 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 IL17RAQ96F46 866 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 TMEM87BQ96K49 555 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 ARID3AQ99856 593 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 ZKSCAN3Q9BRR0 538 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 LRRC2Q9BYS8 371 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 CABP5Q9NP86 173 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 ZSWIM5Q9P217 1185 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 NAP1L2Q9ULW6 460 aaPredicted RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 NOVA2Q9UNW9 492 aaKnown RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.22□□□□□ -1.41
LIG3-210ENST00000588109 TACC3Q9Y6A5 838 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 MYH8P13535 1937 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 WDR19Q8NEZ3 1342 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 SIPA1L1O43166 1804 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 SERTM1A2A2V5 107 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 CCDC69A6NI79 296 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 PPP1R12BO60237 982 aaPredicted RBP6.21□□□□□ -1.42
LIG3-210ENST00000588109 GDF11O95390 407 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 SLURP2P0DP57 97 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 AKR1B1P15121 316 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 MSX1P28360 303 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 MCM2P49736 904 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 ANTXR2P58335 489 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 EXOSC10Q01780 885 aaKnown RBP6.21□□□□□ -1.42
LIG3-210ENST00000588109 ATP2B2Q01814 1243 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 PRKG1Q13976 671 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 WTAPQ15007 396 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 ABCB5Q2M3G0 1257 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 CCDC178Q5BJE1 867 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 TBCELQ5QJ74 424 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 MAP1SQ66K74 1059 aaPredicted RBP6.21□□□□□ -1.42
LIG3-210ENST00000588109 SYNE3Q6ZMZ3 975 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 LDHDQ86WU2 507 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 C1orf216Q8TAB5 229 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 BRF1Q92994 677 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 CDCA5Q96FF9 252 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 CCDC17Q96LX7 622 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 TEPSINQ96N21 525 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 TRERF1Q96PN7 1200 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 ZNF341Q9BYN7 854 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 GLIS2Q9BZE0 524 aaPredicted RBP6.21□□□□□ -1.42
LIG3-210ENST00000588109 NUCKS1Q9H1E3 243 aaKnown RBP6.21□□□□□ -1.42
LIG3-210ENST00000588109 DNAJC18Q9H819 358 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 ZNF408Q9H9D4 720 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 PGAP2Q9UHJ9 254 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 STX8Q9UNK0 236 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 ANGEL1Q9UNK9 670 aaKnown RBP6.21□□□□□ -1.42
LIG3-210ENST00000588109 TNKSO95271 1327 aa6.21□□□□□ -1.42
LIG3-210ENST00000588109 KLF18A0A0U1RQI7 1052 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 SH2B2O14492 632 aaPredicted RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 NMT2O60551 498 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 GH2P01242 217 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 HSP90AA1P07900 732 aaKnown RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 NOS2P35228 1153 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 PSMA6P60900 246 aaKnown RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 COL9A3Q14050 684 aaPredicted RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 RAB3GAP1Q15042 981 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 TEAD4Q15561 434 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 IFIT1BQ5T764 474 aaKnown RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 TATDN1Q6P1N9 297 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 DLK2Q6UY11 383 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 TMEM179Q6ZVK1 233 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 METTL16Q86W50 562 aaKnown RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 TMTC2Q8N394 836 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 NEDD1Q8NHV4 660 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 SCG3Q8WXD2 468 aaKnown RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 NANOS1Q8WY41 292 aaKnown RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 SNX21Q969T3 373 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 VTI1AQ96AJ9 217 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 TTC14Q96N46 770 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 WRNIP1Q96S55 665 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 MTA3Q9BTC8 594 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 TSPAN10Q9H1Z9 355 aaPredicted RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 RUBCNLQ9H714 662 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 KAT14Q9H8E8 782 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 ZBTB21Q9ULJ3 1066 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 SLC12A7Q9Y666 1083 aa6.2□□□□□ -1.42
LIG3-210ENST00000588109 POLR2AP24928 1970 aaKnown RBP6.2□□□□□ -1.42
LIG3-210ENST00000588109 GOLGA8BA8MQT2 603 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 K7ELQ4 463 aaPredicted RBP6.19□□□□□ -1.42
LIG3-210ENST00000588109 TRAF5O00463 557 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 ZBTB43O43298 467 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 ATG7O95352 703 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 TTLL1O95922 423 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 ASNSP08243 561 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 YY1P25490 414 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 CAP2P40123 477 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 IREB2P48200 963 aaKnown RBP6.19□□□□□ -1.42
LIG3-210ENST00000588109 FOXK2Q01167 660 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms