RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 FMR1Q06787 632 aaKnown RBP eCLIP12.69□□□□□ -0.385e-6■■■■□ 22.9
LIG3-204ENST00000585740 SPAG1Q07617 926 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 STIM1Q13586 685 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 CUL4BQ13620 913 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 TNIP1Q15025 636 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 CDC37Q16543 378 aaPredicted RBP12.69□□□□□ -0.38
LIG3-204ENST00000585740 SYDE2Q5VT97 1194 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 CIAPIN1Q6FI81 312 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 MOXD1Q6UVY6 613 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 IGSF22Q8N9C0 903 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 CCDC112Q8NEF3 446 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 MTMR9Q96QG7 549 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 AMNQ9BXJ7 453 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 LRRC27Q9C0I9 530 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 SH2D4AQ9H788 454 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 GOPCQ9HD26 462 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 KBTBD4Q9NVX7 518 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 TMEM260Q9NX78 707 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 STK17AQ9UEE5 414 aa12.69□□□□□ -0.38
LIG3-204ENST00000585740 PPP1R3GB7ZBB8 358 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 TCP10L2B9ZVM9 353 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 RAD21O60216 631 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 PPP1R11O60927 126 aaPredicted RBP12.68□□□□□ -0.38
LIG3-204ENST00000585740 FOSP01100 380 aaPredicted RBP12.68□□□□□ -0.38
LIG3-204ENST00000585740 ATP1A3P13637 1013 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 RPS12P25398 132 aaKnown RBP12.68□□□□□ -0.38
LIG3-204ENST00000585740 USP11P51784 963 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 LRMPQ12912 555 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 TPD52L1Q16890 204 aaPredicted RBP12.68□□□□□ -0.38
LIG3-204ENST00000585740 FILIP1LQ4L180 1135 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 FBXO11Q86XK2 927 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 SIAH1Q8IUQ4 282 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 VSTM4Q8IW00 320 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 ANKRD20A12PQ8NF67 263 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 JDP2Q8WYK2 163 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 PRIMPOLQ96LW4 560 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 TAOK3Q9H2K8 898 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 KCND1Q9NSA2 647 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 RWDD2AQ9UIY3 292 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 PCDHA1Q9Y5I3 950 aa12.68□□□□□ -0.38
LIG3-204ENST00000585740 COL4A5P29400 1685 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 CCP110O43303 1012 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 SKILP12757 684 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 PAK1Q13153 545 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 NAALADL2Q58DX5 795 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 ZBED3Q96IU2 234 aaPredicted RBP12.67□□□□□ -0.38
LIG3-204ENST00000585740 C7orf25Q9BPX7 421 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 BLZF1Q9H2G9 400 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 GINM1Q9NU53 330 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 LRWD1Q9UFC0 647 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 TMX2Q9Y320 296 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 STK24Q9Y6E0 443 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 CNTNAP1P78357 1384 aa12.67□□□□□ -0.38
LIG3-204ENST00000585740 LTBP3Q9NS15 1303 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CYP3A7-CYP3A51PA0A087WV96 503 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CLRN2A0PK11 232 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 MARCH6O60337 910 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 PLA2G6O60733 806 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 RHOBTB3O94955 611 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 PLCG1P19174 1290 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CYP3A7P24462 503 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 TECP42680 631 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 TXKP42681 527 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CCZ1BP86790 482 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CCZ1P86791 482 aaPredicted RBP12.66□□□□□ -0.38
LIG3-204ENST00000585740 CXCL9Q07325 125 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 IKQ13123 557 aaPredicted RBP12.66□□□□□ -0.38
LIG3-204ENST00000585740 TNFAIP1Q13829 316 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 UBE2SQ16763 222 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CDKAL1Q5VV42 579 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 KRT79Q5XKE5 535 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 KLHL10Q6JEL2 608 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 NOC3LQ8WTT2 800 aaKnown RBP12.66□□□□□ -0.38
LIG3-204ENST00000585740 CHURC1Q8WUH1 139 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 STAMQ92783 540 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CDK5RAP3Q96JB5 506 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 MTRQ99707 1265 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 ANO3Q9BYT9 981 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 VEZTQ9HBM0 779 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 DDX25Q9UHL0 483 aaKnown RBP12.66□□□□□ -0.38
LIG3-204ENST00000585740 ZBTB21Q9ULJ3 1066 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 CTNND2Q9UQB3 1225 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 R3HCC1Q9Y3T6 440 aaKnown RBP12.66□□□□□ -0.38
LIG3-204ENST00000585740 ATAD5Q96QE3 1844 aa12.66□□□□□ -0.38
LIG3-204ENST00000585740 KDM3AQ9Y4C1 1321 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 A0A1B0GTH6 734 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 PP2D1A8MPX8 630 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 TMEM232C9JQI7 657 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 H7C1D1 291 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 KIF2AO00139 706 aaPredicted RBP12.65□□□□□ -0.38
LIG3-204ENST00000585740 TDP2O95551 362 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 SLURP2P0DP57 97 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 CD44P16070 742 aaKnown RBP12.65□□□□□ -0.38
LIG3-204ENST00000585740 CASP1P29466 404 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 MAP3K10Q02779 954 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 RASSF7Q02833 373 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 COBLL1Q53SF7 1204 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 SV2BQ7L1I2 683 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 FAM160B2Q86V87 743 aa12.65□□□□□ -0.38
LIG3-204ENST00000585740 TRMT44Q8IYL2 757 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms