RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TYRO3Q06418 890 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L24Q0WX57 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 SPP2Q13103 211 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 MTMR2Q13614 643 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 IL17AQ16552 155 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L6PQ6QN14 398 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP49Q70CQ1 688 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 LPAR1Q92633 364 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 TIGD1Q96MW7 591 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 SDF4Q9BRK5 362 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 EMILIN3Q9NT22 766 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 KCNH3Q9ULD8 1083 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 LOC285556D6RIA3 1793 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 EDIL3O43854 480 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 CCNT1O60563 726 aaKnown RBP11.95□□□□□ -0.5
SS18-217ENST00000580958 ARL6IP4Q66PJ3 421 aaKnown RBP11.95□□□□□ -0.5
SS18-217ENST00000580958 SASS6Q6UVJ0 657 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 KRT26Q7Z3Y9 468 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 RNF214Q8ND24 703 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 ZNF280CQ8ND82 737 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.95□□□□□ -0.5
SS18-217ENST00000580958 SLF1Q9BQI6 1058 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 TANGO6Q9C0B7 1094 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.95□□□□□ -0.5
SS18-217ENST00000580958 COLQQ9Y215 455 aaPredicted RBP11.95□□□□□ -0.5
SS18-217ENST00000580958 ZHX2Q9Y6X8 837 aa11.95□□□□□ -0.5
SS18-217ENST00000580958 POLR2DO15514 142 aaKnown RBP11.94□□□□□ -0.5
SS18-217ENST00000580958 VCAM1P19320 739 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 BACE1P56817 501 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 MAP3K9P80192 1104 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 TRAF1Q13077 416 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 ORC2Q13416 577 aaPredicted RBP11.94□□□□□ -0.5
SS18-217ENST00000580958 EAPPQ56P03 285 aaPredicted RBP11.94□□□□□ -0.5
SS18-217ENST00000580958 KRBA2Q6ZNG9 492 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 SYMPKQ92797 1274 aaKnown RBP11.94□□□□□ -0.5
SS18-217ENST00000580958 ERCC4Q92889 916 aaPredicted RBP11.94□□□□□ -0.5
SS18-217ENST00000580958 CDCA5Q96FF9 252 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 EPSTI1Q96J88 318 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 ANO3Q9BYT9 981 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 PANK2Q9BZ23 570 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 TAF1DQ9H5J8 278 aaPredicted RBP11.94□□□□□ -0.5
SS18-217ENST00000580958 RPAP3Q9H6T3 665 aaPredicted RBP11.94□□□□□ -0.5
SS18-217ENST00000580958 SERTAD1Q9UHV2 236 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 UTRNP46939 3433 aa11.94□□□□□ -0.5
SS18-217ENST00000580958 ABCB11O95342 1321 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 POTECB2RU33 542 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 LAD1O00515 517 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 MEIS2O14770 477 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 OPLAHO14841 1288 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 NEMFO60524 1076 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 TDP2O95551 362 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 OR52Z1P0C646 297 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 LONP1P36776 959 aaKnown RBP11.93□□□□□ -0.5
SS18-217ENST00000580958 PRPHP41219 470 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 AP3B2Q13367 1082 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 VGLL4Q14135 290 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 LONRF3Q496Y0 759 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 DTHD1Q6ZMT9 781 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.93□□□□□ -0.5
SS18-217ENST00000580958 PDILTQ8N807 584 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 PRPF38AQ8NAV1 312 aaKnown RBP11.93□□□□□ -0.5
SS18-217ENST00000580958 CNNM3Q8NE01 707 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 ZC3H15Q8WU90 426 aaKnown RBP11.93□□□□□ -0.5
SS18-217ENST00000580958 P2RX7Q99572 595 aaKnown RBP11.93□□□□□ -0.5
SS18-217ENST00000580958 SNCAIPQ9Y6H5 919 aa11.93□□□□□ -0.5
SS18-217ENST00000580958 A0A087WWV3 80 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 A0A087X0B3 334 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 IQCA1LA6NCM1 817 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 C19orf81C9J6K1 198 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 ACTN4O43707 911 aaKnown RBP11.92□□□□□ -0.5
SS18-217ENST00000580958 SLC37A4O43826 429 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 PPP1R12BO60237 982 aaPredicted RBP11.92□□□□□ -0.5
SS18-217ENST00000580958 FLOT1O75955 427 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 HMGCS2P54868 508 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 STX1AQ16623 288 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 ANO6Q4KMQ2 910 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 MCTP2Q6DN12 878 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 LDHDQ86WU2 507 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 TBC1D5Q92609 795 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 DHX58Q96C10 678 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 C12orf42Q96LP6 360 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 KIAA1468Q9P260 1216 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 CCPG1Q9ULG6 757 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 PPP1R9AQ9ULJ8 1098 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 PCDHB8Q9UN66 801 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 MRPL11Q9Y3B7 192 aaKnown RBP11.92□□□□□ -0.5
SS18-217ENST00000580958 AFG3L2Q9Y4W6 797 aa11.92□□□□□ -0.5
SS18-217ENST00000580958 ZNF536O15090 1300 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 POTEMA6NI47 508 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 SPDYE3A6NKU9 549 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 FOXN1O15353 648 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 FOSP01100 380 aaPredicted RBP11.91□□□□□ -0.5
SS18-217ENST00000580958 ICAM1P05362 532 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 HOXA13P31271 388 aaPredicted RBP11.91□□□□□ -0.5
SS18-217ENST00000580958 NF2P35240 595 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 IREB2P48200 963 aaKnown RBP11.91□□□□□ -0.5
SS18-217ENST00000580958 PNOCQ13519 176 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 TTLL12Q14166 644 aaPredicted RBP11.91□□□□□ -0.5
SS18-217ENST00000580958 CALCRLQ16602 461 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 AGBL1Q96MI9 1066 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms