RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ADCY3O60266 1144 aa17.86■□□□□ 0.45
SS18-216ENST00000580751 COBLO75128 1261 aa17.86■□□□□ 0.45
SS18-216ENST00000580751 DEXIO95424 95 aa17.86■□□□□ 0.45
SS18-216ENST00000580751 PGK2P07205 417 aa17.86■□□□□ 0.45
SS18-216ENST00000580751 HMGN5P82970 282 aaKnown RBP17.86■□□□□ 0.45
SS18-216ENST00000580751 WWC2Q6AWC2 1192 aa17.86■□□□□ 0.45
SS18-216ENST00000580751 GPKOWQ92917 476 aaPredicted RBP eCLIP17.86■□□□□ 0.45
SS18-216ENST00000580751 BARHL2Q9NY43 387 aa17.86■□□□□ 0.45
SS18-216ENST00000580751 MAP3K20Q9NYL2 800 aaKnown RBP17.86■□□□□ 0.45
SS18-216ENST00000580751 KIF3AQ9Y496 699 aa17.86■□□□□ 0.45
SS18-216ENST00000580751 NAPAP54920 295 aa17.85■□□□□ 0.45
SS18-216ENST00000580751 RPS6P62753 249 aaKnown RBP17.85■□□□□ 0.45
SS18-216ENST00000580751 GHRHRQ02643 423 aa17.85■□□□□ 0.45
SS18-216ENST00000580751 BAATQ14032 418 aaPredicted RBP17.85■□□□□ 0.45
SS18-216ENST00000580751 ZNF792Q3KQV3 632 aa17.85■□□□□ 0.45
SS18-216ENST00000580751 SLC30A10Q6XR72 485 aa17.85■□□□□ 0.45
SS18-216ENST00000580751 TEX2Q8IWB9 1127 aa17.85■□□□□ 0.45
SS18-216ENST00000580751 CCDC12Q8WUD4 166 aaPredicted RBP17.85■□□□□ 0.45
SS18-216ENST00000580751 MCOLN1Q9GZU1 580 aa17.85■□□□□ 0.45
SS18-216ENST00000580751 ZNFX1Q9P2E3 1918 aaKnown RBP17.85■□□□□ 0.45
SS18-216ENST00000580751 OPLAHO14841 1288 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 PPFIA3O75145 1194 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 CTDNEP1O95476 244 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 CFBP00751 764 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 HMGCRP04035 888 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 CALML3P27482 149 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 GRK4P32298 578 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 DDIT3P35638 169 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 HSD17B4P51659 736 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 PKN1Q16512 942 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 SLC9C1Q4G0N8 1177 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 OLFML2BQ68BL8 750 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 ZNF467Q7Z7K2 595 aaPredicted RBP17.84■□□□□ 0.45
SS18-216ENST00000580751 CCDC83Q8IWF9 413 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 FAM133AQ8N9E0 248 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 NPLOC4Q8TAT6 608 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 WASF1Q92558 559 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 MAML3Q96JK9 1138 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 GLT8D2Q9H1C3 349 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 ADD3Q9UEY8 706 aaKnown RBP17.84■□□□□ 0.45
SS18-216ENST00000580751 SMC3Q9UQE7 1217 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 PLXNA1Q9UIW2 1896 aa17.84■□□□□ 0.45
SS18-216ENST00000580751 GCOM1H8Y6P7 765 aaPredicted RBP17.83■□□□□ 0.44
SS18-216ENST00000580751 STXBP3O00186 592 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 POLR2MP0CAP2 368 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 ELNP15502 786 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 PDCP20941 246 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 ST3GAL1Q11201 340 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 COL13A1Q5TAT6 717 aaPredicted RBP17.83■□□□□ 0.44
SS18-216ENST00000580751 FAM177A1Q8N128 213 aaPredicted RBP17.83■□□□□ 0.44
SS18-216ENST00000580751 MSL3Q8N5Y2 521 aaKnown RBP17.83■□□□□ 0.44
SS18-216ENST00000580751 NSUN7Q8NE18 718 aaKnown RBP17.83■□□□□ 0.44
SS18-216ENST00000580751 CCDC148Q8NFR7 591 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 SMARCC2Q8TAQ2 1214 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 TRIB2Q92519 343 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 CUL5Q93034 780 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 PSTPIP2Q9H939 334 aa17.83■□□□□ 0.44
SS18-216ENST00000580751 LOC102724159A0A0B4J2E5 919 aa17.82■□□□□ 0.44
SS18-216ENST00000580751 PIK3CDO00329 1044 aa17.82■□□□□ 0.44
SS18-216ENST00000580751 CNTN2Q02246 1040 aa17.82■□□□□ 0.44
SS18-216ENST00000580751 PWP2Q15269 919 aaKnown RBP17.82■□□□□ 0.44
SS18-216ENST00000580751 CCL14Q16627 93 aa17.82■□□□□ 0.44
SS18-216ENST00000580751 DNERQ8NFT8 737 aa17.82■□□□□ 0.44
SS18-216ENST00000580751 SYTL5Q8TDW5 730 aaPredicted RBP17.82■□□□□ 0.44
SS18-216ENST00000580751 MPHOSPH6Q99547 160 aaKnown RBP17.82■□□□□ 0.44
SS18-216ENST00000580751 SH3GLB2Q9NR46 395 aa17.82■□□□□ 0.44
SS18-216ENST00000580751 ORC3Q9UBD5 711 aaPredicted RBP17.82■□□□□ 0.44
SS18-216ENST00000580751 ESYT2A0FGR8 921 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 XBP1P17861 261 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 ADCY7P51828 1080 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 MRPL12P52815 198 aaKnown RBP17.81■□□□□ 0.44
SS18-216ENST00000580751 NUCB2P80303 420 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 MFSD14CQ5VZR4 134 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 TYW1BQ6NUM6 668 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 TBC1D5Q92609 795 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 FGD4Q96M96 766 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 TINF2Q9BSI4 451 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 CHMP5Q9NZZ3 219 aa17.81■□□□□ 0.44
SS18-216ENST00000580751 BIN2Q9UBW5 565 aaPredicted RBP17.81■□□□□ 0.44
SS18-216ENST00000580751 LCTP09848 1927 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 SYNGAP1Q96PV0 1343 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 SOWAHBA6NEL2 793 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 SMCO2A6NFE2 343 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 ASB14A6NK59 587 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 B4DLN1 442 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 JAK2O60674 1132 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 INHAP05111 366 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 HOXA13P31271 388 aaPredicted RBP17.8■□□□□ 0.44
SS18-216ENST00000580751 ALDH5A1P51649 535 aaPredicted RBP17.8■□□□□ 0.44
SS18-216ENST00000580751 UBXN2AP68543 259 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 MAMDC4Q6UXC1 1216 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 NSUN6Q8TEA1 469 aaKnown RBP17.8■□□□□ 0.44
SS18-216ENST00000580751 SH3TC2Q8TF17 1288 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 ARMC5Q96C12 935 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 C6orf50Q9HD87 102 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 RIC8AQ9NPQ8 531 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 FLRT1Q9NZU1 646 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 VPS54Q9P1Q0 977 aa17.8■□□□□ 0.44
SS18-216ENST00000580751 MEIS2O14770 477 aa17.79■□□□□ 0.44
SS18-216ENST00000580751 IGHA2P01877 340 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms