RNA–Protein interactions for RNA: ENST00000580446.1

CSNK1D-213, Transcript of casein kinase 1 delta, humanhuman

TSL 3

Gene CSNK1D, Length 612 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-213ENST00000580446 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.02■□□□□ 0.32
CSNK1D-213ENST00000580446 KIFC2Q96AC6 838 aa17.02■□□□□ 0.32
CSNK1D-213ENST00000580446 SEZ6LQ9BYH1 1024 aa17.02■□□□□ 0.32
CSNK1D-213ENST00000580446 NSUN3Q9H649 340 aaKnown RBP17.02■□□□□ 0.32
CSNK1D-213ENST00000580446 GOPCQ9HD26 462 aa17.02■□□□□ 0.32
CSNK1D-213ENST00000580446 TANC1Q9C0D5 1861 aa17.01■□□□□ 0.31
CSNK1D-213ENST00000580446 NBNO60934 754 aa17.01■□□□□ 0.31
CSNK1D-213ENST00000580446 TBX10O75333 385 aa17.01■□□□□ 0.31
CSNK1D-213ENST00000580446 PKN1Q16512 942 aa17.01■□□□□ 0.31
CSNK1D-213ENST00000580446 RMDN1Q96DB5 314 aa17.01■□□□□ 0.31
CSNK1D-213ENST00000580446 IGFLR1Q9H665 355 aa17.01■□□□□ 0.31
CSNK1D-213ENST00000580446 CTDP1Q9Y5B0 961 aaPredicted RBP17.01■□□□□ 0.31
CSNK1D-213ENST00000580446 SIP14410 1827 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 MAGEB6P1A0A0J9YX57 407 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 HYAL1Q12794 435 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 BFSP2Q13515 415 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 TNNI3KQ59H18 835 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 KIAA1211Q6ZU35 1233 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 NAV1Q8NEY1 1877 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 CHMP4CQ96CF2 233 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 ASIC4Q96FT7 647 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 RALYQ9UKM9 306 aaKnown RBP17■□□□□ 0.31
CSNK1D-213ENST00000580446 FPGT-TNNI3KV9GXZ4 949 aa17■□□□□ 0.31
CSNK1D-213ENST00000580446 ZBED4O75132 1171 aa16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 G3BP1Q13283 466 aaKnown RBP eCLIP16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 CNKSR3Q6P9H4 555 aa16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 DHX38Q92620 1227 aaKnown RBP16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 MTG1Q9BT17 334 aaPredicted RBP16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 A1CFQ9NQ94 594 aaKnown RBP16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 CTNNA3Q9UI47 895 aa16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 VPS13AQ96RL7 3174 aa16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 TPRP12270 2363 aaKnown RBP16.99■□□□□ 0.31
CSNK1D-213ENST00000580446 CHD8Q9HCK8 2581 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 PNMA6EA0A0J9YXQ4 647 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 PRKAB2O43741 272 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 SMAD4Q13485 552 aaKnown RBP16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 IQSEC1Q6DN90 963 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 LRRC8DQ7L1W4 858 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 DGLUCYQ7Z3D6 616 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 MYOCDQ8IZQ8 938 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 LCORLQ8N3X6 602 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 CTAGE1Q96RT6 745 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 DCP1AQ9NPI6 582 aaPredicted RBP16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 POLR3EQ9NVU0 708 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 CHD6Q8TD26 2715 aa16.98■□□□□ 0.31
CSNK1D-213ENST00000580446 H3BNC9 293 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 NDUFB10O96000 172 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 NBL1P41271 181 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 CDK8P49336 464 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 SIGLEC14Q08ET2 396 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 PTGISQ16647 500 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 OR6J1Q8NGC5 347 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 CRNKL1Q9BZJ0 848 aaKnown RBP16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 IRF2BPLQ9H1B7 796 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 GPHNQ9NQX3 736 aaPredicted RBP16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 SWAP70Q9UH65 585 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 CD207Q9UJ71 328 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 DBNLQ9UJU6 430 aaKnown RBP16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 COG6Q9Y2V7 657 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 ZNF292O60281 2723 aa16.97■□□□□ 0.31
CSNK1D-213ENST00000580446 MYO7AQ13402 2215 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 DMXL1Q9Y485 3027 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 ASB14A6NK59 587 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 GALR2O43603 387 aaPredicted RBP16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 SELPP16109 830 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 CTC1Q2NKJ3 1217 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 SLFNL1Q499Z3 407 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 CERS3Q8IU89 383 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 STK11IPQ8N1F8 1099 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 PRPF38AQ8NAV1 312 aaKnown RBP16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 CHST13Q8NET6 341 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 NKD2Q969F2 451 aaPredicted RBP16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 CCDC8Q9H0W5 538 aaPredicted RBP16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 SLC38A10Q9HBR0 1119 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 INCENPQ9NQS7 918 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 SMC4Q9NTJ3 1288 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 INSL6Q9Y581 213 aa16.96■□□□□ 0.31
CSNK1D-213ENST00000580446 ATP2A1O14983 1001 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 SNAP25P60880 206 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 GDF6Q6KF10 455 aaPredicted RBP16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.95■□□□□ 0.37e-6■□□□□ 10.8
CSNK1D-213ENST00000580446 TMEM192Q8IY95 271 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 COPS5Q92905 334 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 RPGRIP1Q96KN7 1286 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 ARMT1Q9H993 441 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 KANSL2Q9H9L4 492 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 RNF146Q9NTX7 359 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 FBXO40Q9UH90 709 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 Q9Y3F1 56 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 ACACBO00763 2458 aa16.95■□□□□ 0.3
CSNK1D-213ENST00000580446 ABHD14A-ACY1A0A1B0GW23 586 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 LOC730098B7Z3J9 87 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 F5H6K3 240 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 UPP2O95045 317 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 KLRC3Q07444 240 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 MTX1Q13505 466 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 DUSP28Q4G0W2 176 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 NFRKBQ6P4R8 1299 aa16.94■□□□□ 0.3
CSNK1D-213ENST00000580446 FBXO11Q86XK2 927 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms