RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SCN10AQ9Y5Y9 1956 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 NFIBO00712 420 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 TLR3O15455 904 aaKnown RBP16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 SMPD1P17405 629 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 ITGB8P26012 769 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 RPS6P62753 249 aaKnown RBP16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 FPGSQ05932 587 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 RNF207Q6ZRF8 634 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 KAT14Q9H8E8 782 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 GPCPD1Q9NPB8 672 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 SUPT16HQ9Y5B9 1047 aaKnown RBP16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 CDH23Q9H251 3354 aa16.97■□□□□ 0.31
SMARCE1-216ENST00000580419 ABCB11O95342 1321 aa16.96■□□□□ 0.31
SMARCE1-216ENST00000580419 FRMPD2Q68DX3 1309 aaPredicted RBP16.96■□□□□ 0.31
SMARCE1-216ENST00000580419 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.96■□□□□ 0.31
SMARCE1-216ENST00000580419 KPNA6O60684 536 aa16.96■□□□□ 0.31
SMARCE1-216ENST00000580419 TRAF1Q13077 416 aa16.96■□□□□ 0.31
SMARCE1-216ENST00000580419 MYO9BQ13459 2157 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 UNC80Q8N2C7 3258 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 B4E1Z4 1266 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 CPT1AP50416 773 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 SNAP25P60880 206 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 PPIGQ13427 754 aaKnown RBP eCLIP16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 C9orf50Q5SZB4 431 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 MCF2L2Q86YR7 1114 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 SCFD2Q8WU76 684 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 IWS1Q96ST2 819 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 UBAC1Q9BSL1 405 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 MTA3Q9BTC8 594 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 POLR3EQ9NVU0 708 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 MTMR7Q9Y216 660 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 U3KPZ7 1027 aaPredicted RBP16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 KIAA1217Q5T5P2 1943 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 TNKSO95271 1327 aa16.95■□□□□ 0.3
SMARCE1-216ENST00000580419 PTPDC1A2A3K4 754 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 PARP1P09874 1014 aaKnown RBP16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 GSPT1P15170 499 aaKnown RBP16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 PDE4AP27815 886 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 SEC23AQ15436 765 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 BRDTQ58F21 947 aaPredicted RBP16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 RASIP1Q5U651 963 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 KIAA1211Q6ZU35 1233 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 NOL8Q76FK4 1167 aaKnown RBP16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 FBXO16Q8IX29 292 aaPredicted RBP16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 TMEM199Q8N511 208 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 MTMR8Q96EF0 704 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 WDR11Q9BZH6 1224 aa16.94■□□□□ 0.3
SMARCE1-216ENST00000580419 A6NJR5 290 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 DYNC1LI2O43237 492 aaPredicted RBP16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 CHMLP26374 656 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 TRDNQ13061 729 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 ITGA7Q13683 1181 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 IFIT1BQ5T764 474 aaKnown RBP16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 ZNF697Q5TEC3 545 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 SLC30A10Q6XR72 485 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 ADGRF4Q8IZF3 695 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 VTI1AQ96AJ9 217 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 PDGFCQ9NRA1 345 aa16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 MRPL11Q9Y3B7 192 aaKnown RBP16.93■□□□□ 0.3
SMARCE1-216ENST00000580419 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 SUPT20HL2P0C7V6 817 aa16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 IRX5P78411 483 aaPredicted RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 PTPN11Q06124 597 aaPredicted RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 PDE4DQ08499 809 aa16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 CDC37Q16543 378 aaPredicted RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 PSRC1Q6PGN9 363 aaPredicted RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 CXCL17Q6UXB2 119 aa16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 NSUN6Q8TEA1 469 aaKnown RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 RNPC3Q96LT9 517 aaKnown RBP16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 MAP3K14Q99558 947 aa16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 ZKSCAN3Q9BRR0 538 aa16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 GRIN2DO15399 1336 aa16.92■□□□□ 0.3
SMARCE1-216ENST00000580419 PRUNE2Q8WUY3 3088 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 PALM3A6NDB9 673 aaPredicted RBP16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 SGSM2O43147 1006 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 CALML3P27482 149 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 EPHB4P54760 987 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 PURAQ00577 322 aaKnown RBP16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 BEX3Q00994 111 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 PPP2R5BQ15173 497 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 Q7L0L9 218 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 IL25Q9H293 177 aa16.91■□□□□ 0.3
SMARCE1-216ENST00000580419 BAZ2BQ9UIF8 2168 aaKnown RBP16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 PFKMP08237 780 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 GOLGA8HP0CJ92 632 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 TTLL4Q14679 1199 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 QRICH1Q2TAL8 776 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 NFRKBQ6P4R8 1299 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 CCDC62Q6P9F0 684 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 EEPD1Q7L9B9 569 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 FBXO11Q86XK2 927 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 SYTL5Q8TDW5 730 aaPredicted RBP16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 MAP4K1Q92918 833 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 EMID1Q96A84 441 aaPredicted RBP16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 CHMP4CQ96CF2 233 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 GUCD1Q96NT3 240 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 PURBQ96QR8 312 aaKnown RBP16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 AMNQ9BXJ7 453 aa16.9■□□□□ 0.3
SMARCE1-216ENST00000580419 UBA5Q9GZZ9 404 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms