RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TAPT1Q6NXT6 567 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 CHRDL2Q6WN34 429 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 ZNF654Q8IZM8 581 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 LENG1Q96BZ8 264 aaPredicted RBP17.26■□□□□ 0.35
SS18-212ENST00000579061 PURBQ96QR8 312 aaKnown RBP17.26■□□□□ 0.35
SS18-212ENST00000579061 SH2B2O14492 632 aaPredicted RBP17.25■□□□□ 0.35
SS18-212ENST00000579061 EDNRBP24530 442 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 SMARCA1P28370 1054 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 KIF5BP33176 963 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 ATN1P54259 1190 aaPredicted RBP17.25■□□□□ 0.35
SS18-212ENST00000579061 RTP1P59025 263 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 GHRHRQ02643 423 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 TNFAIP2Q03169 654 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 SAMD3Q8N6K7 520 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 PCSK9Q8NBP7 692 aaKnown RBP17.25■□□□□ 0.35
SS18-212ENST00000579061 MAP3K20Q9NYL2 800 aaKnown RBP17.25■□□□□ 0.35
SS18-212ENST00000579061 GNEQ9Y223 722 aaKnown RBP17.25■□□□□ 0.35
SS18-212ENST00000579061 Q9Y3F1 56 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 TRIOBPQ9H2D6 2365 aa17.25■□□□□ 0.35
SS18-212ENST00000579061 RBM47A0AV96 593 aaKnown RBP17.24■□□□□ 0.35
SS18-212ENST00000579061 CCDC69A6NI79 296 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 C6orf222P0C671 652 aaPredicted RBP17.24■□□□□ 0.35
SS18-212ENST00000579061 KRT32Q14532 448 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 SLC35G1Q2M3R5 365 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 CTCFLQ8NI51 663 aaPredicted RBP17.24■□□□□ 0.35
SS18-212ENST00000579061 NUP133Q8WUM0 1156 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 FERMT2Q96AC1 680 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 NEK1Q96PY6 1258 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 GDF15Q99988 308 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 LZTS2Q9BRK4 669 aa17.24■□□□□ 0.35
SS18-212ENST00000579061 ZMYND8Q9ULU4 1186 aaPredicted RBP17.24■□□□□ 0.35
SS18-212ENST00000579061 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.23■□□□□ 0.35
SS18-212ENST00000579061 A0A1W2PPC1 479 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 A0A1W2PQ45 241 aaPredicted RBP17.23■□□□□ 0.35
SS18-212ENST00000579061 A0A1W2PQY0 241 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 CYTH3O43739 400 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 CALM1P0DP23 149 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 CALM2P0DP24 149 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 CALM3P0DP25 149 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 BMP8BP34820 402 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 GNAQP50148 359 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 ACLYP53396 1101 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 PDE4DQ08499 809 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 KCNA10Q16322 511 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 NFXL1Q6ZNB6 911 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 SGMS1Q86VZ5 419 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 FBXO16Q8IX29 292 aaPredicted RBP17.23■□□□□ 0.35
SS18-212ENST00000579061 SYTL5Q8TDW5 730 aaPredicted RBP17.23■□□□□ 0.35
SS18-212ENST00000579061 TBC1D5Q92609 795 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 SPZ1Q9BXG8 430 aa17.23■□□□□ 0.35
SS18-212ENST00000579061 GPHNQ9NQX3 736 aaPredicted RBP17.23■□□□□ 0.35
SS18-212ENST00000579061 KIAA1217Q5T5P2 1943 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 PNMA6FA0A0J9YX94 578 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 CTAGE5O15320 804 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 EPB41L2O43491 1005 aaKnown RBP17.22■□□□□ 0.35
SS18-212ENST00000579061 PPP1R11O60927 126 aaPredicted RBP17.22■□□□□ 0.35
SS18-212ENST00000579061 SMPD1P17405 629 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 SYN1P17600 705 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 HSD17B4P51659 736 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 DUSP28Q4G0W2 176 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 GNASQ5JWF2 1037 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 NOL8Q76FK4 1167 aaKnown RBP17.22■□□□□ 0.35
SS18-212ENST00000579061 EEPD1Q7L9B9 569 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 RASEFQ8IZ41 740 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 NSUN6Q8TEA1 469 aaKnown RBP17.22■□□□□ 0.35
SS18-212ENST00000579061 KCNB2Q92953 911 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 PIGSQ96S52 555 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 IWS1Q96ST2 819 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 PDGFCQ9NRA1 345 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 RBM27Q9P2N5 1060 aaKnown RBP17.22■□□□□ 0.35
SS18-212ENST00000579061 ATP11BQ9Y2G3 1177 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 PCDHA1Q9Y5I3 950 aa17.22■□□□□ 0.35
SS18-212ENST00000579061 DDX49Q9Y6V7 483 aaKnown RBP17.22■□□□□ 0.35
SS18-212ENST00000579061 ELP1O95163 1332 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 MYADML2A6NDP7 307 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 REC8O95072 547 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 HMGB1P09429 215 aaKnown RBP17.21■□□□□ 0.35
SS18-212ENST00000579061 EXOSC10Q01780 885 aaKnown RBP17.21■□□□□ 0.35
SS18-212ENST00000579061 COL9A3Q14050 684 aaPredicted RBP17.21■□□□□ 0.35
SS18-212ENST00000579061 DHX32Q7L7V1 743 aaKnown RBP17.21■□□□□ 0.35
SS18-212ENST00000579061 TLK2Q86UE8 772 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 HOMER1Q86YM7 354 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 GLT1D1Q96MS3 346 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 TAAR1Q96RJ0 339 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 AP5M1Q9H0R1 490 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 STARD7Q9NQZ5 370 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 SLC12A7Q9Y666 1083 aa17.21■□□□□ 0.35
SS18-212ENST00000579061 RANBP2P49792 3224 aaKnown RBP17.2■□□□□ 0.34
SS18-212ENST00000579061 OPLAHO14841 1288 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 NKRFO15226 690 aaKnown RBP eCLIP17.2■□□□□ 0.34
SS18-212ENST00000579061 CFBP00751 764 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 ASGR1P07306 291 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 TRIM60Q495X7 471 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 SCFD2Q8WU76 684 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 TOX2Q96NM4 488 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 RMDN3Q96TC7 470 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 MYL10Q9BUA6 226 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 WDR11Q9BZH6 1224 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 COL20A1Q9P218 1284 aa17.2■□□□□ 0.34
SS18-212ENST00000579061 PRKAG2Q9UGJ0 569 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms