RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 ESYT1Q9BSJ8 1104 aa18.06■□□□□ 0.48
SF3B3-215ENST00000577085 JMJD4Q9H9V9 463 aa18.06■□□□□ 0.48
SF3B3-215ENST00000577085 MRPL11Q9Y3B7 192 aaKnown RBP18.06■□□□□ 0.48
SF3B3-215ENST00000577085 ELP1O95163 1332 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 MROH7Q68CQ1 1323 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 DYNC1LI2O43237 492 aaPredicted RBP18.05■□□□□ 0.48
SF3B3-215ENST00000577085 SMPD1P17405 629 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 FSCN1Q16658 493 aaKnown RBP18.05■□□□□ 0.48
SF3B3-215ENST00000577085 RGS22Q8NE09 1264 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 AMNQ9BXJ7 453 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 MAF1Q9H063 256 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 PDLIM7Q9NR12 457 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 PDGFCQ9NRA1 345 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 TMEM39AQ9NV64 488 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 PCDH10Q9P2E7 1040 aa18.05■□□□□ 0.48
SF3B3-215ENST00000577085 MCM3APO60318 1980 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 A0A0U1RQG5 324 aaPredicted RBP18.04■□□□□ 0.48
SF3B3-215ENST00000577085 NEFLP07196 543 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 BEX3Q00994 111 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 TRAF1Q13077 416 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 CCSAPQ6IQ19 270 aaPredicted RBP18.04■□□□□ 0.48
SF3B3-215ENST00000577085 TAPT1Q6NXT6 567 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 NFXL1Q6ZNB6 911 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 STAG2Q8N3U4 1231 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 MORC4Q8TE76 937 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 WDR11Q9BZH6 1224 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 MAD2L2Q9UI95 211 aa18.04■□□□□ 0.48
SF3B3-215ENST00000577085 GNEQ9Y223 722 aaKnown RBP18.04■□□□□ 0.48
SF3B3-215ENST00000577085 CABYRO75952 493 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 RAG1P15918 1043 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 IRX5P78411 483 aaPredicted RBP18.03■□□□□ 0.48
SF3B3-215ENST00000577085 GRM4Q14833 912 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 BRDTQ58F21 947 aaPredicted RBP18.03■□□□□ 0.48
SF3B3-215ENST00000577085 RNF20Q5VTR2 975 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 STOX1Q6ZVD7 989 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 HOMER1Q86YM7 354 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 LSG1Q9H089 658 aaKnown RBP18.03■□□□□ 0.48
SF3B3-215ENST00000577085 Q9Y3F1 56 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 TAF6LQ9Y6J9 622 aa18.03■□□□□ 0.48
SF3B3-215ENST00000577085 RANBP2P49792 3224 aaKnown RBP18.03■□□□□ 0.48
SF3B3-215ENST00000577085 PALM3A6NDB9 673 aaPredicted RBP18.02■□□□□ 0.48
SF3B3-215ENST00000577085 ZBTB5O15062 677 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 TLR3O15455 904 aaKnown RBP18.02■□□□□ 0.48
SF3B3-215ENST00000577085 MCM5P33992 734 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 PPP2R5BQ15173 497 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 DUSP28Q4G0W2 176 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 ANKRD33Q7Z3H0 272 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 SH3RF1Q7Z6J0 888 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 SKAP1Q86WV1 359 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 CTCFLQ8NI51 663 aaPredicted RBP18.02■□□□□ 0.48
SF3B3-215ENST00000577085 NSUN6Q8TEA1 469 aaKnown RBP18.02■□□□□ 0.48
SF3B3-215ENST00000577085 BADQ92934 168 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 TOX2Q96NM4 488 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 PCDHA1Q9Y5I3 950 aa18.02■□□□□ 0.48
SF3B3-215ENST00000577085 TRIM43BA6NCK2 446 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 CCDC69A6NI79 296 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 SLC27A2O14975 620 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 PRC1O43663 620 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 CFBP00751 764 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 KIF5BP33176 963 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 CPT1AP50416 773 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 LRIT3Q3SXY7 679 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 ARHGEF16Q5VV41 709 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 CXCL17Q6UXB2 119 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 MB21D2Q8IYB1 491 aaPredicted RBP18.01■□□□□ 0.47
SF3B3-215ENST00000577085 TMTC2Q8N394 836 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 SCFD2Q8WU76 684 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 TRIM43Q96BQ3 446 aaPredicted RBP18.01■□□□□ 0.47
SF3B3-215ENST00000577085 RMDN3Q96TC7 470 aa18.01■□□□□ 0.47
SF3B3-215ENST00000577085 GPHNQ9NQX3 736 aaPredicted RBP18.01■□□□□ 0.47
SF3B3-215ENST00000577085 TRIOBPQ9H2D6 2365 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 ARVCFO00192 962 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 NKRFO15226 690 aaKnown RBP eCLIP18■□□□□ 0.47
SF3B3-215ENST00000577085 CDC45O75419 566 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 NKX3-2P78367 333 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 CREB3L3Q68CJ9 461 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 OR6J1Q8NGC5 347 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 SYTL5Q8TDW5 730 aaPredicted RBP18■□□□□ 0.47
SF3B3-215ENST00000577085 IGDCC4Q8TDY8 1250 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 SENP2Q9HC62 589 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 LRRC37A2A6NM11 1700 aa18■□□□□ 0.47
SF3B3-215ENST00000577085 SOX1O00570 391 aaPredicted RBP17.99■□□□□ 0.47
SF3B3-215ENST00000577085 KIAA0355O15063 1070 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 CTAGE5O15320 804 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 DDAH1O94760 285 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 TXNP10599 105 aaKnown RBP17.99■□□□□ 0.47
SF3B3-215ENST00000577085 EDNRBP24530 442 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 ANTXR2P58335 489 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 FAAP100Q0VG06 881 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 TROAPQ12815 778 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 TTLL4Q14679 1199 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 STXBP2Q15833 593 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 ZNF654Q8IZM8 581 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 TBC1D5Q92609 795 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 LRCH3Q96II8 777 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 TMEM87BQ96K49 555 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 TAAR1Q96RJ0 339 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 PIGSQ96S52 555 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 IWS1Q96ST2 819 aa17.99■□□□□ 0.47
SF3B3-215ENST00000577085 MTA3Q9BTC8 594 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms