RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 HYAL1Q12794 435 aa19.74■□□□□ 0.75
VPS53-218ENST00000575207 IQSEC1Q6DN90 963 aa19.74■□□□□ 0.75
VPS53-218ENST00000575207 ANKRD35Q8N283 1001 aa19.74■□□□□ 0.75
VPS53-218ENST00000575207 POLR3EQ9NVU0 708 aa19.74■□□□□ 0.75
VPS53-218ENST00000575207 PARNO95453 639 aaKnown RBP19.73■□□□□ 0.75
VPS53-218ENST00000575207 TCTN1Q2MV58 587 aa19.73■□□□□ 0.75
VPS53-218ENST00000575207 FAM117BQ6P1L5 589 aa19.73■□□□□ 0.75
VPS53-218ENST00000575207 NFRKBQ6P4R8 1299 aa19.73■□□□□ 0.75
VPS53-218ENST00000575207 AFAP1L1Q8TED9 768 aa19.73■□□□□ 0.75
VPS53-218ENST00000575207 SCN10AQ9Y5Y9 1956 aa19.73■□□□□ 0.75
VPS53-218ENST00000575207 TRIP12Q14669 1992 aaPredicted RBP19.72■□□□□ 0.75
VPS53-218ENST00000575207 ICAM3P32942 547 aa19.72■□□□□ 0.75
VPS53-218ENST00000575207 ICA1Q05084 483 aa19.72■□□□□ 0.75
VPS53-218ENST00000575207 PTPN11Q06124 597 aaPredicted RBP19.72■□□□□ 0.75
VPS53-218ENST00000575207 MKRN4PQ13434 485 aaPredicted RBP19.72■□□□□ 0.75
VPS53-218ENST00000575207 CLEC10AQ8IUN9 316 aa19.72■□□□□ 0.75
VPS53-218ENST00000575207 CAGE1Q8TC20 777 aa19.72■□□□□ 0.75
VPS53-218ENST00000575207 MSLNLQ96KJ4 702 aa19.72■□□□□ 0.75
VPS53-218ENST00000575207 FAM47CQ5HY64 1035 aa19.71■□□□□ 0.75
VPS53-218ENST00000575207 TAPT1Q6NXT6 567 aa19.71■□□□□ 0.75
VPS53-218ENST00000575207 TMEM105Q8N8V8 129 aa19.71■□□□□ 0.75
VPS53-218ENST00000575207 FAM133AQ8N9E0 248 aa19.71■□□□□ 0.75
VPS53-218ENST00000575207 MTG1Q9BT17 334 aaPredicted RBP19.71■□□□□ 0.75
VPS53-218ENST00000575207 PDGFCQ9NRA1 345 aa19.71■□□□□ 0.75
VPS53-218ENST00000575207 FBXO40Q9UH90 709 aa19.71■□□□□ 0.75
VPS53-218ENST00000575207 CYP2E1P05181 493 aaPredicted RBP19.7■□□□□ 0.74
VPS53-218ENST00000575207 CYP7A1P22680 504 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 CNTN2Q02246 1040 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 IKBKEQ14164 716 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 ACAP1Q15027 740 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 PTPN21Q16825 1174 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 TMEM63BQ5T3F8 832 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 TMEM192Q8IY95 271 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 SNRKQ9NRH2 765 aa19.7■□□□□ 0.74
VPS53-218ENST00000575207 ASB14A6NK59 587 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 NBNO60934 754 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 SELPP16109 830 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 ADAM15Q13444 863 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 FBXO11Q86XK2 927 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 WDR63Q8IWG1 891 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 CCDC155Q8N6L0 562 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 MIGA1Q8NAN2 632 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 CHST13Q8NET6 341 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 PTPRCP08575 1304 aa19.69■□□□□ 0.74
VPS53-218ENST00000575207 POLR3DP05423 398 aaPredicted RBP19.68■□□□□ 0.74
VPS53-218ENST00000575207 FAM83BQ5T0W9 1011 aa19.68■□□□□ 0.74
VPS53-218ENST00000575207 KIAA2013Q8IYS2 634 aa19.68■□□□□ 0.74
VPS53-218ENST00000575207 SMRP1Q8NCR6 262 aa19.68■□□□□ 0.74
VPS53-218ENST00000575207 SLF1Q9BQI6 1058 aa19.68■□□□□ 0.74
VPS53-218ENST00000575207 GPR179Q6PRD1 2367 aa19.68■□□□□ 0.74
VPS53-218ENST00000575207 OTOGLQ3ZCN5 2332 aa19.67■□□□□ 0.74
VPS53-218ENST00000575207 UBTFL1P0CB47 393 aaPredicted RBP19.67■□□□□ 0.74
VPS53-218ENST00000575207 EVX2Q03828 476 aa19.67■□□□□ 0.74
VPS53-218ENST00000575207 RBL2Q08999 1139 aa19.67■□□□□ 0.74
VPS53-218ENST00000575207 LRRC8DQ7L1W4 858 aa19.67■□□□□ 0.74
VPS53-218ENST00000575207 PHF7Q9BWX1 381 aaPredicted RBP19.67■□□□□ 0.74
VPS53-218ENST00000575207 LMAN2LQ9H0V9 348 aa19.67■□□□□ 0.74
VPS53-218ENST00000575207 NOD1Q9Y239 953 aa19.67■□□□□ 0.74
VPS53-218ENST00000575207 LINC01565O15544 149 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 MYL3P08590 195 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 AKR1B1P15121 316 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 GTF2F1P35269 517 aaKnown RBP eCLIP19.66■□□□□ 0.74
VPS53-218ENST00000575207 CPT1AP50416 773 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 RRP1P56182 461 aaKnown RBP19.66■□□□□ 0.74
VPS53-218ENST00000575207 DUSP28Q4G0W2 176 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.66■□□□□ 0.74
VPS53-218ENST00000575207 CPXCR1Q8N123 301 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 CTAGE1Q96RT6 745 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 GPHNQ9NQX3 736 aaPredicted RBP19.66■□□□□ 0.74
VPS53-218ENST00000575207 ATG2AQ2TAZ0 1938 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 MICAL3Q7RTP6 2002 aa19.66■□□□□ 0.74
VPS53-218ENST00000575207 MYO5AQ9Y4I1 1855 aaKnown RBP19.65■□□□□ 0.74
VPS53-218ENST00000575207 USP17L12C9JPN9 530 aa19.65■□□□□ 0.74
VPS53-218ENST00000575207 USP17L21D6R901 530 aa19.65■□□□□ 0.74
VPS53-218ENST00000575207 SLC4A3P48751 1232 aa19.65■□□□□ 0.74
VPS53-218ENST00000575207 COASYQ13057 564 aa19.65■□□□□ 0.74
VPS53-218ENST00000575207 PRPF38AQ8NAV1 312 aaKnown RBP19.65■□□□□ 0.74
VPS53-218ENST00000575207 GOPCQ9HD26 462 aa19.65■□□□□ 0.74
VPS53-218ENST00000575207 SWAP70Q9UH65 585 aa19.65■□□□□ 0.74
VPS53-218ENST00000575207 PCDHGC5Q9Y5F6 944 aa19.65■□□□□ 0.74
VPS53-218ENST00000575207 EEF2P13639 858 aaKnown RBP19.64■□□□□ 0.73
VPS53-218ENST00000575207 FBXO16Q8IX29 292 aaPredicted RBP19.64■□□□□ 0.73
VPS53-218ENST00000575207 MRPL50Q8N5N7 158 aaKnown RBP19.64■□□□□ 0.73
VPS53-218ENST00000575207 PPP1R13LQ8WUF5 828 aa19.64■□□□□ 0.73
VPS53-218ENST00000575207 SEMA4AQ9H3S1 761 aa19.64■□□□□ 0.73
VPS53-218ENST00000575207 PIH1D3Q9NQM4 214 aaKnown RBP19.64■□□□□ 0.73
VPS53-218ENST00000575207 CLEC1BQ9P126 229 aa19.64■□□□□ 0.73
VPS53-218ENST00000575207 RALYQ9UKM9 306 aaKnown RBP19.64■□□□□ 0.73
VPS53-218ENST00000575207 SETXQ7Z333 2677 aaKnown RBP19.64■□□□□ 0.73
VPS53-218ENST00000575207 C5orf67F2Z3F1 127 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 AMHP03971 560 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 NDUFV1P49821 464 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 PTGISQ16647 500 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 KIAA1211Q6ZU35 1233 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 RPGRIP1Q96KN7 1286 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 IGFLR1Q9H665 355 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 RAVER2Q9HCJ3 691 aaKnown RBP19.63■□□□□ 0.73
VPS53-218ENST00000575207 VTA1Q9NP79 307 aa19.63■□□□□ 0.73
VPS53-218ENST00000575207 ZBED4O75132 1171 aa19.62■□□□□ 0.73
VPS53-218ENST00000575207 LMNAP02545 664 aaKnown RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms