RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 RNF32Q9H0A6 362 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 IMPACTQ9P2X3 320 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 NPFFR2Q9Y5X5 522 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 TAF6LQ9Y6J9 622 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 C7orf72A4D263 438 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 MEFVO15553 781 aaPredicted RBP7.16□□□□□ -1.26
NUP88-208ENST00000574087 CORO7P57737 925 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 MVKQ03426 396 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 NTRK3Q16288 839 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 KCNMB1Q16558 191 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 INF2Q27J81 1249 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 TMEM67Q5HYA8 995 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 FAM209AQ5JX71 171 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 PPIL6Q8IXY8 311 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 FAM168AQ92567 244 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 KISS1RQ969F8 398 aaPredicted RBP7.16□□□□□ -1.26
NUP88-208ENST00000574087 CRTAC1Q9NQ79 661 aa7.16□□□□□ -1.26
NUP88-208ENST00000574087 TRBV23-1A0A0A0MS06 115 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.15□□□□□ -1.26
NUP88-208ENST00000574087 PPP1R11O60927 126 aaPredicted RBP7.15□□□□□ -1.26
NUP88-208ENST00000574087 GALK1P51570 392 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 MCTP1Q6DN14 999 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 NOP9Q86U38 636 aaKnown RBP7.15□□□□□ -1.26
NUP88-208ENST00000574087 NUP43Q8NFH3 380 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 DIO2Q92813 273 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 SLC26A8Q96RN1 970 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 CDC6Q99741 560 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 DHRS4Q9BTZ2 278 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 KANSL2Q9H9L4 492 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 YBX2Q9Y2T7 364 aaKnown RBP7.15□□□□□ -1.26
NUP88-208ENST00000574087 PTCH2Q9Y6C5 1203 aa7.15□□□□□ -1.26
NUP88-208ENST00000574087 ZNF503-AS2A6NEH8 195 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 MSL3P1P0C860 447 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 PNLIPP16233 465 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 PRKCAP17252 672 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 KCNAB2Q13303 367 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 SQSTM1Q13501 440 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 SIRT2Q8IXJ6 389 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 ZSWIM2Q8NEG5 633 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 SH3TC2Q8TF17 1288 aa7.14□□□□□ -1.27
NUP88-208ENST00000574087 RNPC3Q96LT9 517 aaKnown RBP7.14□□□□□ -1.27
NUP88-208ENST00000574087 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.14□□□□□ -1.27
NUP88-208ENST00000574087 NPHS1O60500 1241 aa7.13□□□□□ -1.27
NUP88-208ENST00000574087 C6orf222P0C671 652 aaPredicted RBP7.13□□□□□ -1.27
NUP88-208ENST00000574087 LTBRP36941 435 aa7.13□□□□□ -1.27
NUP88-208ENST00000574087 SUMO1P63165 101 aaKnown RBP7.13□□□□□ -1.27
NUP88-208ENST00000574087 CYP4F8P98187 520 aa7.13□□□□□ -1.27
NUP88-208ENST00000574087 USP53Q70EK8 1073 aa7.13□□□□□ -1.27
NUP88-208ENST00000574087 RCBTB1Q8NDN9 531 aa7.13□□□□□ -1.27
NUP88-208ENST00000574087 DPF3Q92784 378 aa7.13□□□□□ -1.27
NUP88-208ENST00000574087 INTS4Q96HW7 963 aaKnown RBP7.13□□□□□ -1.27
NUP88-208ENST00000574087 MRPS23Q9Y3D9 190 aaKnown RBP7.13□□□□□ -1.27
NUP88-208ENST00000574087 CCDC163A0A0D9SF12 145 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 A0A1W2PQ27 194 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 A0A1W2PQ64 194 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 A0A1W2PQC6 194 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 A0A1W2PQD8 194 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 BLACEA4D250 179 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 LCP1P13796 627 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 RSPO2Q6UXX9 243 aaPredicted RBP7.12□□□□□ -1.27
NUP88-208ENST00000574087 JAZF1Q86VZ6 243 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 DCAF4Q8WV16 495 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 IPO9Q96P70 1041 aaKnown RBP7.12□□□□□ -1.27
NUP88-208ENST00000574087 MTA3Q9BTC8 594 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 SLC6A17Q9H1V8 727 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 PDLIM7Q9NR12 457 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 GPR27Q9NS67 375 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 TMEM260Q9NX78 707 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 GULP1Q9UBP9 304 aa7.12□□□□□ -1.27
NUP88-208ENST00000574087 ERVFRD-1P60508 538 aa7.11□□□□□ -1.27
NUP88-208ENST00000574087 STYK1Q6J9G0 422 aa7.11□□□□□ -1.27
NUP88-208ENST00000574087 LIN37Q96GY3 246 aaPredicted RBP7.11□□□□□ -1.27
NUP88-208ENST00000574087 TNFRSF12AQ9NP84 129 aa7.11□□□□□ -1.27
NUP88-208ENST00000574087 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.11□□□□□ -1.27
NUP88-208ENST00000574087 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.11□□□□□ -1.27
NUP88-208ENST00000574087 FBLN5Q9UBX5 448 aa7.11□□□□□ -1.27
NUP88-208ENST00000574087 RWDD3Q9Y3V2 267 aa7.11□□□□□ -1.27
NUP88-208ENST00000574087 TIMM13Q9Y5L4 95 aaPredicted RBP7.11□□□□□ -1.27
NUP88-208ENST00000574087 MSCO60682 206 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 ARL4AP40617 200 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 RBM10P98175 930 aaKnown RBP7.1□□□□□ -1.27
NUP88-208ENST00000574087 GIMAP6Q6P9H5 292 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 KCNT2Q6UVM3 1135 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 IRF2BP1Q8IU81 584 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 Q8N1Y9 231 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 PLEKHO2Q8TD55 490 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 PHF20Q9BVI0 1012 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 FBXL7Q9UJT9 491 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 TBX22Q9Y458 520 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 MRPL42Q9Y6G3 142 aaKnown RBP7.1□□□□□ -1.27
NUP88-208ENST00000574087 ASXL2Q76L83 1435 aa7.1□□□□□ -1.27
NUP88-208ENST00000574087 ESYT3A0FGR9 886 aa7.09□□□□□ -1.27
NUP88-208ENST00000574087 BCL6P41182 706 aa7.09□□□□□ -1.27
NUP88-208ENST00000574087 GTF2A2P52657 109 aa7.09□□□□□ -1.27
NUP88-208ENST00000574087 RPL11P62913 178 aaKnown RBP7.09□□□□□ -1.27
NUP88-208ENST00000574087 NLRP10Q86W26 655 aa7.09□□□□□ -1.27
NUP88-208ENST00000574087 LZTR1Q8N653 840 aa7.09□□□□□ -1.27
NUP88-208ENST00000574087 PTPRN2Q92932 1015 aa7.09□□□□□ -1.27
NUP88-208ENST00000574087 ZFYVE21Q9BQ24 234 aa7.09□□□□□ -1.27
NUP88-208ENST00000574087 FAM53CQ9NYF3 392 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms