RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 TAPT1Q6NXT6 567 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 CNKSR3Q6P9H4 555 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 ERMP1Q7Z2K6 904 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 BANK1Q8NDB2 785 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 EDAQ92838 391 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 A1CFQ9NQ94 594 aaKnown RBP15.66■□□□□ 0.1
CCDC40-208ENST00000572270 FAM86C1Q9NVL1 165 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 FEM1BQ9UK73 627 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 SCN10AQ9Y5Y9 1956 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 TMEM221A6NGB7 291 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 M0R296 226 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 EFCAB14O75071 495 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 PTPN11Q06124 597 aaPredicted RBP15.65■□□□□ 0.1
CCDC40-208ENST00000572270 SLFN5Q08AF3 891 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 DUSP28Q4G0W2 176 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 FAM117BQ6P1L5 589 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 RNF135Q8IUD6 432 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 CAGE1Q8TC20 777 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 AFAP1L1Q8TED9 768 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 C17orf80Q9BSJ5 609 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 ARMT1Q9H993 441 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 RNF146Q9NTX7 359 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 CLDND1Q9NY35 253 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 TRIP12Q14669 1992 aaPredicted RBP15.65■□□□□ 0.1
CCDC40-208ENST00000572270 RAD50Q92878 1312 aa15.65■□□□□ 0.1
CCDC40-208ENST00000572270 GREB1LQ9C091 1923 aaPredicted RBP15.64■□□□□ 0.09
CCDC40-208ENST00000572270 MYH4Q9Y623 1939 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 CYP2D7A0A087X1C5 515 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 ABHD14A-ACY1A0A1B0GW23 586 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 TECTAO75443 2155 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 PARNO95453 639 aaKnown RBP15.64■□□□□ 0.09
CCDC40-208ENST00000572270 CT47B1P0C2W7 299 aaPredicted RBP15.64■□□□□ 0.09
CCDC40-208ENST00000572270 FDX1P10109 184 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 POLA2Q14181 598 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 TCEAL5Q5H9L2 206 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 TMEM63BQ5T3F8 832 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 KMT2EQ8IZD2 1858 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 OR6J1Q8NGC5 347 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 ATOH1Q92858 354 aaPredicted RBP15.64■□□□□ 0.09
CCDC40-208ENST00000572270 EAF2Q96CJ1 260 aaPredicted RBP15.64■□□□□ 0.09
CCDC40-208ENST00000572270 NYAP2Q9P242 653 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 INSL6Q9Y581 213 aa15.64■□□□□ 0.09
CCDC40-208ENST00000572270 DDX49Q9Y6V7 483 aaKnown RBP15.64■□□□□ 0.09
CCDC40-208ENST00000572270 SMAD2Q15796 467 aaKnown RBP15.63■□□□□ 0.09
CCDC40-208ENST00000572270 TRIM67Q6ZTA4 783 aa15.63■□□□□ 0.09
CCDC40-208ENST00000572270 PPP1R13LQ8WUF5 828 aa15.63■□□□□ 0.09
CCDC40-208ENST00000572270 ARHGAP45Q92619 1136 aa15.63■□□□□ 0.09
CCDC40-208ENST00000572270 SAMD11Q96NU1 681 aa15.63■□□□□ 0.09
CCDC40-208ENST00000572270 WDR11Q9BZH6 1224 aa15.63■□□□□ 0.09
CCDC40-208ENST00000572270 NSUN3Q9H649 340 aaKnown RBP15.63■□□□□ 0.09
CCDC40-208ENST00000572270 ISY1Q9ULR0 285 aaKnown RBP15.63■□□□□ 0.09
CCDC40-208ENST00000572270 NCK2O43639 380 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 PRKAB2O43741 272 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 KPNA6O60684 536 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 MBD4O95243 580 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 SELPP16109 830 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 IKBKEQ14164 716 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 PTGISQ16647 500 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 TKFCQ3LXA3 575 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 LRRC8DQ7L1W4 858 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 RPAINQ86UA6 219 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 FBXL6Q8N531 539 aa15.62■□□□□ 0.09
CCDC40-208ENST00000572270 TCRBV5S4A2TA0A5A2 114 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 ALAS1P13196 640 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 CHMP4BP1P59074 171 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 COL19A1Q14993 1142 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 EPC2Q52LR7 807 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 SSH3Q8TE77 659 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 TRERF1Q96PN7 1200 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.61■□□□□ 0.09
CCDC40-208ENST00000572270 CLIP2Q9UDT6 1046 aa15.61■□□□□ 0.09
CCDC40-208ENST00000572270 ZFHX2Q9C0A1 2572 aaPredicted RBP15.6■□□□□ 0.09
CCDC40-208ENST00000572270 SPTBN4Q9H254 2564 aa15.6■□□□□ 0.09
CCDC40-208ENST00000572270 STXBP3O00186 592 aa15.6■□□□□ 0.09
CCDC40-208ENST00000572270 CXCL10P02778 98 aa15.6■□□□□ 0.09
CCDC40-208ENST00000572270 IKQ13123 557 aaPredicted RBP15.6■□□□□ 0.09
CCDC40-208ENST00000572270 GPM6BQ13491 265 aa15.6■□□□□ 0.09
CCDC40-208ENST00000572270 CLUL1Q15846 466 aa15.6■□□□□ 0.09
CCDC40-208ENST00000572270 MKNK2Q9HBH9 465 aa15.6■□□□□ 0.09
CCDC40-208ENST00000572270 H3BNC9 293 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 ANP32CO43423 234 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 MBTPS2O43462 519 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 BCAR3O75815 825 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 STAT2P52630 851 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 GPNMBQ14956 572 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 AACSQ86V21 672 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 RPAP2Q8IXW5 612 aaPredicted RBP15.59■□□□□ 0.09
CCDC40-208ENST00000572270 DNAJC2Q99543 621 aaKnown RBP15.59■□□□□ 0.09
CCDC40-208ENST00000572270 CYP39A1Q9NYL5 469 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 NOP58Q9Y2X3 529 aaKnown RBP15.59■□□□□ 0.09
CCDC40-208ENST00000572270 NLRC5Q86WI3 1866 aa15.59■□□□□ 0.09
CCDC40-208ENST00000572270 LCTP09848 1927 aa15.58■□□□□ 0.09
CCDC40-208ENST00000572270 MYO15AQ9UKN7 3530 aa15.58■□□□□ 0.08
CCDC40-208ENST00000572270 GOLIM4O00461 696 aa15.58■□□□□ 0.08
CCDC40-208ENST00000572270 NKRFO15226 690 aaKnown RBP eCLIP15.58■□□□□ 0.08
CCDC40-208ENST00000572270 NBNO60934 754 aa15.58■□□□□ 0.08
CCDC40-208ENST00000572270 AMHP03971 560 aa15.58■□□□□ 0.08
CCDC40-208ENST00000572270 BMP3P12645 472 aa15.58■□□□□ 0.08
CCDC40-208ENST00000572270 ATP8B2P98198 1209 aa15.58■□□□□ 0.08
CCDC40-208ENST00000572270 SMAD4Q13485 552 aaKnown RBP15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms