RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PCDHA13Q9Y5I0 950 aa11.97□□□□□ -0.49
CCDC40-207ENST00000572253 COL1A1P02452 1464 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-207ENST00000572253 SLIT2O94813 1529 aa11.97□□□□□ -0.49
CCDC40-207ENST00000572253 MAPK8IP2Q13387 824 aaPredicted RBP11.96□□□□□ -0.49
CCDC40-207ENST00000572253 ERFEQ4G0M1 354 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 FOXR1Q6PIV2 292 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 SV2BQ7L1I2 683 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 STAG2Q8N3U4 1231 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 EEF2KMTQ96G04 330 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 MMRN2Q9H8L6 949 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 ZNF287Q9HBT7 754 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.96□□□□□ -0.49
CCDC40-207ENST00000572253 RCCD1A6NED2 376 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 PRLRP16471 622 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 KLK7P49862 253 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 CORO7P57737 925 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 SLC4A8Q2Y0W8 1093 aa11.96□□□□□ -0.49
CCDC40-207ENST00000572253 GSPT2Q8IYD1 628 aaKnown RBP11.96□□□□□ -0.49
CCDC40-207ENST00000572253 MYH13Q9UKX3 1938 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 ADAMTS3O15072 1205 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 CCNT1O60563 726 aaKnown RBP11.96□□□□□ -0.5
CCDC40-207ENST00000572253 HSF2BPO75031 334 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 KIF11P52732 1056 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 NAP1L1P55209 391 aaKnown RBP11.96□□□□□ -0.5
CCDC40-207ENST00000572253 CLEC4GQ6UXB4 293 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 ZNF384Q8TF68 577 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 ANKS1AQ92625 1134 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 TSG101Q99816 390 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 SH2D4AQ9H788 454 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 SEC63Q9UGP8 760 aaKnown RBP11.96□□□□□ -0.5
CCDC40-207ENST00000572253 STX8Q9UNK0 236 aa11.96□□□□□ -0.5
CCDC40-207ENST00000572253 A6NNZ2 444 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 PDE2AO00408 941 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 MATR3P43243 847 aaKnown RBP eCLIP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 MAGEA1P43355 309 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 EPHB4P54760 987 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 TXNRD1Q16881 649 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 TUBB8Q3ZCM7 444 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 CACNA2D4Q7Z3S7 1137 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 ZSCAN29Q8IWY8 852 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 EFCAB13Q8IY85 973 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 CCDC155Q8N6L0 562 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 RIN2Q8WYP3 895 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 CDCA7Q9BWT1 371 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 TSKSQ9UJT2 592 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 PLAGL2Q9UPG8 496 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 STXBP3O00186 592 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 EBAG9O00559 213 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 USP17L8P0C7I0 530 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 STK4Q13043 487 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 MAN2A1Q16706 1144 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 VWA3BQ502W6 1294 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 NEK8Q86SG6 692 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 FAM207AQ9NSI2 230 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 DUSP10Q9Y6W6 482 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 CACNA1SQ13698 1873 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 PRDX5P30044 214 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 EIF4A3P38919 411 aaKnown RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 SF3B2Q13435 895 aaKnown RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 TMEM266Q2M3C6 531 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 EMBQ6PCB8 327 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 AENQ8WTP8 325 aaKnown RBP11.95□□□□□ -0.5
CCDC40-207ENST00000572253 RAB34Q9BZG1 259 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 LRRC27Q9C0I9 530 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 NDST4Q9H3R1 872 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 TFCP2L1Q9NZI6 479 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 DLEC1Q9Y238 1755 aa11.95□□□□□ -0.5
CCDC40-207ENST00000572253 BAG3O95817 575 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 HOXA7P31268 230 aaPredicted RBP11.94□□□□□ -0.5
CCDC40-207ENST00000572253 RPS8P62241 208 aaKnown RBP11.94□□□□□ -0.5
CCDC40-207ENST00000572253 SKIDA1Q1XH10 827 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 KRT26Q7Z3Y9 468 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 CAPS2Q9BXY5 557 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 TANGO6Q9C0B7 1094 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 MAD2L2Q9UI95 211 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 M0R2N6 131 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 MOCS3O95396 460 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 HNRNPH3P31942 346 aaKnown RBP11.94□□□□□ -0.5
CCDC40-207ENST00000572253 EVX2Q03828 476 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 ORC2Q13416 577 aaPredicted RBP11.94□□□□□ -0.5
CCDC40-207ENST00000572253 C12orf60Q5U649 245 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 ALS2CLQ60I27 953 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 C8orf74Q6P047 294 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 SPATA4Q8NEY3 305 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 RRP36Q96EU6 259 aaKnown RBP11.94□□□□□ -0.5
CCDC40-207ENST00000572253 NOX5Q96PH1 765 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 OSBPL9Q96SU4 736 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 FCER1AP12319 257 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 HSPA2P54652 639 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 GSTO1P78417 241 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 COBLL1Q53SF7 1204 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 MIIPQ5JXC2 388 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 RRAGAQ7L523 313 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 CREG2Q8IUH2 290 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 ACSBG1Q96GR2 724 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 MLXIPQ9HAP2 919 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 SLC39A2Q9NP94 309 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 STK17AQ9UEE5 414 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 SMCO2A6NFE2 343 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 WTIPA6NIX2 430 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms