RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 KLRF2D3W0D1 207 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 CLTBP09497 229 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 ZNF865P0CJ78 1059 aaPredicted RBP11.09□□□□□ -0.63
SF3B3-211ENST00000568291 FDX1P10109 184 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 CALML3P27482 149 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 CDC37Q16543 378 aaPredicted RBP11.09□□□□□ -0.63
SF3B3-211ENST00000568291 QRICH1Q2TAL8 776 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 GPATCH4Q5T3I0 446 aaKnown RBP11.09□□□□□ -0.63
SF3B3-211ENST00000568291 SLC30A10Q6XR72 485 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 CCDC144CPQ8IYA2 1237 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 CMTR1Q8N1G2 835 aaKnown RBP11.09□□□□□ -0.63
SF3B3-211ENST00000568291 CYP39A1Q9NYL5 469 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 FBXO40Q9UH90 709 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 MAD2L2Q9UI95 211 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 LCTP09848 1927 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 SYNRGQ9UMZ2 1314 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 GBF1Q92538 1859 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 ERICH2A1L162 156 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 ADCY6O43306 1168 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 PQBP1O60828 265 aaKnown RBP11.08□□□□□ -0.64
SF3B3-211ENST00000568291 PPP1R11O60927 126 aaPredicted RBP11.08□□□□□ -0.64
SF3B3-211ENST00000568291 SMAD3P84022 425 aaKnown RBP11.08□□□□□ -0.64
SF3B3-211ENST00000568291 CASC1Q6TDU7 716 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 NFXL1Q6ZNB6 911 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 ARMCX2Q7L311 632 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 HOMER1Q86YM7 354 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 FAM133AQ8N9E0 248 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 RNPC3Q96LT9 517 aaKnown RBP11.08□□□□□ -0.64
SF3B3-211ENST00000568291 PIGSQ96S52 555 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 LY9Q9HBG7 655 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 PDGFCQ9NRA1 345 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.08□□□□□ -0.64
SF3B3-211ENST00000568291 SYNGAP1Q96PV0 1343 aa11.08□□□□□ -0.64
SF3B3-211ENST00000568291 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.07□□□□□ -0.64
SF3B3-211ENST00000568291 hCG_1642624A0A1W2PR95 340 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 PALM3A6NDB9 673 aaPredicted RBP11.07□□□□□ -0.64
SF3B3-211ENST00000568291 SH2B2O14492 632 aaPredicted RBP11.07□□□□□ -0.64
SF3B3-211ENST00000568291 KIAA0355O15063 1070 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 ADAMTS4O75173 837 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 RAG1P15918 1043 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 ITGB8P26012 769 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 MCM5P33992 734 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 FPGSQ05932 587 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 TROAPQ12815 778 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 ACVR2BQ13705 512 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 GRM4Q14833 912 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 TKFCQ3LXA3 575 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 ASPRV1Q53RT3 343 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 CCDC82Q8N4S0 544 aa11.07□□□□□ -0.64
SF3B3-211ENST00000568291 MSL3Q8N5Y2 521 aaKnown RBP11.07□□□□□ -0.64
SF3B3-211ENST00000568291 MAFAQ8NHW3 353 aaPredicted RBP11.07□□□□□ -0.64
SF3B3-211ENST00000568291 CDX2Q99626 313 aaPredicted RBP11.07□□□□□ -0.64
SF3B3-211ENST00000568291 COL25A1Q9BXS0 654 aaPredicted RBP11.07□□□□□ -0.64
SF3B3-211ENST00000568291 MYADML2A6NDP7 307 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 CYTH3O43739 400 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 ACLYP53396 1101 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 EPHB4P54760 987 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 RPS6P62753 249 aaKnown RBP11.06□□□□□ -0.64
SF3B3-211ENST00000568291 SART3Q15020 963 aaKnown RBP11.06□□□□□ -0.64
SF3B3-211ENST00000568291 CCDC144BQ3MJ40 725 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 MAMDC4Q6UXC1 1216 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 RNF207Q6ZRF8 634 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 NOL8Q76FK4 1167 aaKnown RBP11.06□□□□□ -0.64
SF3B3-211ENST00000568291 CATIPQ7Z7H3 387 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 FBXO11Q86XK2 927 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 FBXO16Q8IX29 292 aaPredicted RBP11.06□□□□□ -0.64
SF3B3-211ENST00000568291 ZNF654Q8IZM8 581 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 MYLIPQ8WY64 445 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 ZFP91Q96JP5 570 aaPredicted RBP11.06□□□□□ -0.64
SF3B3-211ENST00000568291 NEK1Q96PY6 1258 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 TSEN34Q9BSV6 310 aaKnown RBP11.06□□□□□ -0.64
SF3B3-211ENST00000568291 TTYH1Q9H313 450 aaPredicted RBP11.06□□□□□ -0.64
SF3B3-211ENST00000568291 SEMA6BQ9H3T3 888 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 STARD7Q9NQZ5 370 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 COL20A1Q9P218 1284 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 FAM184BQ9ULE4 1060 aa11.06□□□□□ -0.64
SF3B3-211ENST00000568291 MOXD2PA6NHM9 499 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 CCDC69A6NI79 296 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 DCDC2CA8MYV0 355 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 PLEKHA8P1O95397 391 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 FOSL2P15408 326 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 CST5P28325 142 aaPredicted RBP11.05□□□□□ -0.64
SF3B3-211ENST00000568291 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.05□□□□□ -0.64
SF3B3-211ENST00000568291 ZNF467Q7Z7K2 595 aaPredicted RBP11.05□□□□□ -0.64
SF3B3-211ENST00000568291 TAAR1Q96RJ0 339 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 KATNBL1Q9H079 304 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 TMEM39AQ9NV64 488 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 BRPF3Q9ULD4 1205 aa11.05□□□□□ -0.64
SF3B3-211ENST00000568291 LAMA2P24043 3122 aaKnown RBP11.04□□□□□ -0.64
SF3B3-211ENST00000568291 A0A0C4DFX4 3053 aa11.04□□□□□ -0.64
SF3B3-211ENST00000568291 TMEM265A0A087WTH1 108 aa11.04□□□□□ -0.64
SF3B3-211ENST00000568291 OPLAHO14841 1288 aa11.04□□□□□ -0.64
SF3B3-211ENST00000568291 DUSP11O75319 330 aaKnown RBP11.04□□□□□ -0.64
SF3B3-211ENST00000568291 CFBP00751 764 aa11.04□□□□□ -0.64
SF3B3-211ENST00000568291 C6orf222P0C671 652 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-211ENST00000568291 HOXA13P31271 388 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-211ENST00000568291 NT5C2P49902 561 aa11.04□□□□□ -0.64
SF3B3-211ENST00000568291 BEX3Q00994 111 aa11.04□□□□□ -0.64
SF3B3-211ENST00000568291 EXOSC10Q01780 885 aaKnown RBP11.04□□□□□ -0.64
SF3B3-211ENST00000568291 FAAP100Q0VG06 881 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms