RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 AP1ARQ63HQ0 302 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 CCDC197Q8NCU1 140 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 HVCN1Q96D96 273 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 LSM14BQ9BX40 385 aaKnown RBP12.02□□□□□ -0.49
PALB2-206ENST00000568219 NSRP1Q9H0G5 558 aaKnown RBP12.02□□□□□ -0.49
PALB2-206ENST00000568219 DONSONQ9NYP3 566 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 SWAP70Q9UH65 585 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 AXIN2Q9Y2T1 843 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 MROH2AA6NES4 1674 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 RGS16O15492 202 aaPredicted RBP12.02□□□□□ -0.49
PALB2-206ENST00000568219 GOLGA8HP0CJ92 632 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 MYBL1P10243 752 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 CAVIN4Q5BKX8 364 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 P2RX5Q93086 422 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 LBHD1Q9BQE6 289 aaPredicted RBP12.02□□□□□ -0.49
PALB2-206ENST00000568219 DDX47Q9H0S4 455 aaKnown RBP12.02□□□□□ -0.49
PALB2-206ENST00000568219 SPATS2LQ9NUQ6 558 aaKnown RBP12.02□□□□□ -0.49
PALB2-206ENST00000568219 LRRC53A6NM62 1247 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 PHKG2P15735 406 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 SESN3P58005 492 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 HERVK_113P62684 666 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 FOXO4P98177 505 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 ZNF579Q8NAF0 562 aaKnown RBP12.01□□□□□ -0.49
PALB2-206ENST00000568219 ATP6V1G3Q96LB4 118 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 ZSCAN10Q96SZ4 725 aaPredicted RBP12.01□□□□□ -0.49
PALB2-206ENST00000568219 UBXN6Q9BZV1 441 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.01□□□□□ -0.49
PALB2-206ENST00000568219 SEMA3EO15041 775 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 CNNM4Q6P4Q7 775 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 MDM1Q8TC05 714 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 LIMA1Q9UHB6 759 aaKnown RBP12.01□□□□□ -0.49
PALB2-206ENST00000568219 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.01□□□□□ -0.49
PALB2-206ENST00000568219 KIF1CO43896 1103 aaKnown RBP12.01□□□□□ -0.49
PALB2-206ENST00000568219 FAM153BP0C7A2 387 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 ATP11AP98196 1134 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 IFI16Q16666 785 aaKnown RBP12.01□□□□□ -0.49
PALB2-206ENST00000568219 FAM153CQ494X1 144 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 MYCBPAPQ8TBZ2 947 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 FBF1Q8TES7 1133 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 GPR108Q9NPR9 543 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 FAM153AQ9UHL3 310 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 CAPN11Q9UMQ6 739 aa12.01□□□□□ -0.49
PALB2-206ENST00000568219 ZC3H13Q5T200 1668 aaKnown RBP12.01□□□□□ -0.49
PALB2-206ENST00000568219 A0A1W2PRG0 241 aa12□□□□□ -0.49
PALB2-206ENST00000568219 ANO9A1A5B4 782 aa12□□□□□ -0.49
PALB2-206ENST00000568219 H7C1W4 665 aa12□□□□□ -0.49
PALB2-206ENST00000568219 MPHOSPH10O00566 681 aaKnown RBP12□□□□□ -0.49
PALB2-206ENST00000568219 FCER1AP12319 257 aa12□□□□□ -0.49
PALB2-206ENST00000568219 GNAT2P19087 354 aa12□□□□□ -0.49
PALB2-206ENST00000568219 SLC1A4P43007 532 aa12□□□□□ -0.49
PALB2-206ENST00000568219 TNNI2P48788 182 aa12□□□□□ -0.49
PALB2-206ENST00000568219 PLTPP55058 493 aa12□□□□□ -0.49
PALB2-206ENST00000568219 UBE3CQ15386 1083 aa12□□□□□ -0.49
PALB2-206ENST00000568219 VSIG1Q86XK7 387 aa12□□□□□ -0.49
PALB2-206ENST00000568219 INTS9Q9NV88 658 aaKnown RBP12□□□□□ -0.49
PALB2-206ENST00000568219 HMGB1P1B2RPK0 211 aaPredicted RBP12□□□□□ -0.49
PALB2-206ENST00000568219 NMT2O60551 498 aa12□□□□□ -0.49
PALB2-206ENST00000568219 SCG2P13521 617 aa12□□□□□ -0.49
PALB2-206ENST00000568219 ASIC2Q16515 512 aa12□□□□□ -0.49
PALB2-206ENST00000568219 OTUD6AQ7L8S5 288 aa12□□□□□ -0.49
PALB2-206ENST00000568219 BLIDQ8IZY5 108 aa12□□□□□ -0.49
PALB2-206ENST00000568219 FAM133AQ8N9E0 248 aa12□□□□□ -0.49
PALB2-206ENST00000568219 KLHL29Q96CT2 875 aa12□□□□□ -0.49
PALB2-206ENST00000568219 CYFIP2Q96F07 1278 aa12□□□□□ -0.49
PALB2-206ENST00000568219 RNF26Q9BY78 433 aaPredicted RBP12□□□□□ -0.49
PALB2-206ENST00000568219 RAB34Q9BZG1 259 aa12□□□□□ -0.49
PALB2-206ENST00000568219 NDST4Q9H3R1 872 aa12□□□□□ -0.49
PALB2-206ENST00000568219 RCCD1A6NED2 376 aa12□□□□□ -0.49
PALB2-206ENST00000568219 RPS6KA5O75582 802 aa12□□□□□ -0.49
PALB2-206ENST00000568219 ARID4AP29374 1257 aaPredicted RBP12□□□□□ -0.49
PALB2-206ENST00000568219 MDM2Q00987 491 aaPredicted RBP12□□□□□ -0.49
PALB2-206ENST00000568219 CACNB1Q02641 598 aaPredicted RBP12□□□□□ -0.49
PALB2-206ENST00000568219 PTGISQ16647 500 aa12□□□□□ -0.49
PALB2-206ENST00000568219 GNPTABQ3T906 1256 aa12□□□□□ -0.49
PALB2-206ENST00000568219 EARS2Q5JPH6 523 aaKnown RBP12□□□□□ -0.49
PALB2-206ENST00000568219 CYB5D1Q6P9G0 228 aa12□□□□□ -0.49
PALB2-206ENST00000568219 DZIP1Q86YF9 867 aaKnown RBP12□□□□□ -0.49
PALB2-206ENST00000568219 NRKQ7Z2Y5 1582 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 CEP170BQ9Y4F5 1589 aaPredicted RBP11.99□□□□□ -0.49
PALB2-206ENST00000568219 GLI1P08151 1106 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 TSPY3P0CV98 308 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 TSPY8P0CW00 308 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 CALM1P0DP23 149 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 CALM2P0DP24 149 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 CALM3P0DP25 149 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 PUM3Q15397 648 aaKnown RBP11.99□□□□□ -0.49
PALB2-206ENST00000568219 KRT79Q5XKE5 535 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 HERC4Q5GLZ8 1057 aaPredicted RBP11.99□□□□□ -0.49
PALB2-206ENST00000568219 DNAJC10Q8IXB1 793 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 ZKSCAN4Q969J2 545 aaPredicted RBP11.99□□□□□ -0.49
PALB2-206ENST00000568219 RBM28Q9NW13 759 aaKnown RBP11.99□□□□□ -0.49
PALB2-206ENST00000568219 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.99□□□□□ -0.49
PALB2-206ENST00000568219 PDE8BO95263 885 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 TRHP20396 242 aaPredicted RBP11.99□□□□□ -0.49
PALB2-206ENST00000568219 AARSP49588 968 aaKnown RBP eCLIP11.99□□□□□ -0.49
PALB2-206ENST00000568219 DENND2CQ68D51 928 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 ANKRD40Q6AI12 368 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 DNAAF5Q86Y56 855 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 MED15Q96RN5 788 aa11.99□□□□□ -0.49
PALB2-206ENST00000568219 CPVLQ9H3G5 476 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms