RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 LZTS2Q9BRK4 669 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 AMNQ9BXJ7 453 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 UPF3BQ9BZI7 483 aaKnown RBP11.38□□□□□ -0.59
CLK3-220ENST00000567992 COL20A1Q9P218 1284 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 NRBP1Q9UHY1 535 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 OGDHLQ9ULD0 1010 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 ALPK3Q96L96 1907 aa11.38□□□□□ -0.59
CLK3-220ENST00000567992 PNMA6FA0A0J9YX94 578 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 PTPDC1A2A3K4 754 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 SEPT4O43236 478 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 ADCY6O43306 1168 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 CDC27P30260 824 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 GNAQP50148 359 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 RTN1Q16799 776 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 MAF1Q9H063 256 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.37□□□□□ -0.59
CLK3-220ENST00000567992 DDX20Q9UHI6 824 aaKnown RBP11.37□□□□□ -0.59
CLK3-220ENST00000567992 PCDHA1Q9Y5I3 950 aa11.37□□□□□ -0.59
CLK3-220ENST00000567992 GOLGA8AA7E2F4 631 aa11.36□□□□□ -0.59
CLK3-220ENST00000567992 GOLGA8BA8MQT2 603 aa11.36□□□□□ -0.59
CLK3-220ENST00000567992 EDNRBP24530 442 aa11.36□□□□□ -0.59
CLK3-220ENST00000567992 CALML3P27482 149 aa11.36□□□□□ -0.59
CLK3-220ENST00000567992 ALDH5A1P51649 535 aaPredicted RBP11.36□□□□□ -0.59
CLK3-220ENST00000567992 HSD17B4P51659 736 aa11.36□□□□□ -0.59
CLK3-220ENST00000567992 SYTL5Q8TDW5 730 aaPredicted RBP11.36□□□□□ -0.59
CLK3-220ENST00000567992 DIS3LQ8TF46 1054 aaKnown RBP11.36□□□□□ -0.59
CLK3-220ENST00000567992 PIBF1Q8WXW3 757 aa11.36□□□□□ -0.59
CLK3-220ENST00000567992 LENG1Q96BZ8 264 aaPredicted RBP11.36□□□□□ -0.59
CLK3-220ENST00000567992 RBM28Q9NW13 759 aaKnown RBP11.36□□□□□ -0.59
CLK3-220ENST00000567992 MRPL11Q9Y3B7 192 aaKnown RBP11.36□□□□□ -0.59
CLK3-220ENST00000567992 CYP46A1Q9Y6A2 500 aa11.36□□□□□ -0.59
CLK3-220ENST00000567992 PDE4DIPQ5VU43 2346 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 LOC102724159A0A0B4J2E5 919 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 hCG_1642624A0A1W2PR95 340 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 FARP2O94887 1054 aaPredicted RBP11.35□□□□□ -0.59
CLK3-220ENST00000567992 METAP2P50579 478 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLK3-220ENST00000567992 FGD1P98174 961 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 ACVR2BQ13705 512 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 PWP2Q15269 919 aaKnown RBP11.35□□□□□ -0.59
CLK3-220ENST00000567992 ANO1Q5XXA6 986 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 SYNE3Q6ZMZ3 975 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 ANKLE1Q8NAG6 615 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 RRP36Q96EU6 259 aaKnown RBP11.35□□□□□ -0.59
CLK3-220ENST00000567992 ZHX1Q9UKY1 873 aaPredicted RBP11.35□□□□□ -0.59
CLK3-220ENST00000567992 CNPY2Q9Y2B0 182 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 KIAA1217Q5T5P2 1943 aa11.35□□□□□ -0.59
CLK3-220ENST00000567992 ASB14A6NK59 587 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 MSCO60682 206 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 EIF5BO60841 1220 aaKnown RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 TFRCP02786 760 aaKnown RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 AKR1A1P14550 325 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 CAPN2P17655 700 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 CNGA1P29973 690 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 PDIA3P30101 505 aaKnown RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 ADD1P35611 737 aaKnown RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 MLLT1Q03111 559 aaPredicted RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 NTRK3Q16288 839 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 TYW1BQ6NUM6 668 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 MCF2L2Q86YR7 1114 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 FBXO16Q8IX29 292 aaPredicted RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 CCDC82Q8N4S0 544 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 DNERQ8NFT8 737 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 TAAR1Q96RJ0 339 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 KIF2CQ99661 725 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 ALDH8A1Q9H2A2 487 aaPredicted RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 ABHD16BQ9H3Z7 469 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 PDRG1Q9NUG6 133 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 ADD3Q9UEY8 706 aaKnown RBP11.34□□□□□ -0.59
CLK3-220ENST00000567992 FRMPD4Q14CM0 1322 aa11.34□□□□□ -0.59
CLK3-220ENST00000567992 ADAMTS4O75173 837 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 CFBP00751 764 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 COL6A1P12109 1028 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 HOXA13P31271 388 aaPredicted RBP11.33□□□□□ -0.6
CLK3-220ENST00000567992 PPP2R5BQ15173 497 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 CCDC144BQ3MJ40 725 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 TMEM63BQ5T3F8 832 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 WWC2Q6AWC2 1192 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 TAPT1Q6NXT6 567 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 GPKOWQ92917 476 aaPredicted RBP eCLIP11.33□□□□□ -0.6
CLK3-220ENST00000567992 LARP6Q9BRS8 491 aaKnown RBP11.33□□□□□ -0.6
CLK3-220ENST00000567992 NCOA5Q9HCD5 579 aaKnown RBP11.33□□□□□ -0.6
CLK3-220ENST00000567992 SEC63Q9UGP8 760 aaKnown RBP11.33□□□□□ -0.6
CLK3-220ENST00000567992 SYNRGQ9UMZ2 1314 aa11.33□□□□□ -0.6
CLK3-220ENST00000567992 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.32□□□□□ -0.6
CLK3-220ENST00000567992 RBM47A0AV96 593 aaKnown RBP11.32□□□□□ -0.6
CLK3-220ENST00000567992 PIK3CDO00329 1044 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 MEIS2O14770 477 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 PTGS1P23219 599 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 TRAF1Q13077 416 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 EEPD1Q7L9B9 569 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 SAMD3Q8N6K7 520 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 PAWRQ96IZ0 340 aaKnown RBP11.32□□□□□ -0.6
CLK3-220ENST00000567992 RMDN3Q96TC7 470 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 VTA1Q9NP79 307 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 PXMP2Q9NR77 195 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 PDGFCQ9NRA1 345 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 MAP3K20Q9NYL2 800 aaKnown RBP11.32□□□□□ -0.6
CLK3-220ENST00000567992 TPCN1Q9ULQ1 816 aa11.32□□□□□ -0.6
CLK3-220ENST00000567992 NAP1L2Q9ULW6 460 aaPredicted RBP11.32□□□□□ -0.6
CLK3-220ENST00000567992 MYADML2A6NDP7 307 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms