RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CHMP4BP1P59074 171 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 TKFCQ3LXA3 575 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 BRDTQ58F21 947 aaPredicted RBP8.73□□□□□ -1.01
VPS4A-203ENST00000564399 ZSCAN25Q6NSZ9 544 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 TAPT1Q6NXT6 567 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 NSMFQ6X4W1 530 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 SPRED2Q7Z698 418 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 CHURC1Q8WUH1 139 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 CEP95Q96GE4 821 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 PUS7LQ9H0K6 701 aaKnown RBP8.73□□□□□ -1.01
VPS4A-203ENST00000564399 UBE2ZQ9H832 354 aaPredicted RBP8.73□□□□□ -1.01
VPS4A-203ENST00000564399 VTA1Q9NP79 307 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 LMCD1Q9NZU5 365 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 MTUS1Q9ULD2 1270 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 COL4A4P53420 1690 aaPredicted RBP8.72□□□□□ -1.01
VPS4A-203ENST00000564399 PTPRSQ13332 1948 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 ZNF318Q5VUA4 2279 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 PITPNM1O00562 1244 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 TTLL1O95922 423 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 RLBP1P12271 317 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 ATP5JP18859 108 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 KCNA5P22460 613 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 CPT1AP50416 773 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 PURAQ00577 322 aaKnown RBP8.72□□□□□ -1.01
VPS4A-203ENST00000564399 BFSP2Q13515 415 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 NBPF20Q3BBV1 942 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 DUSP28Q4G0W2 176 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 SBK1Q52WX2 424 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 FAM160B2Q86V87 743 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 FAM178BQ8IXR5 827 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 RPAP2Q8IXW5 612 aaPredicted RBP8.72□□□□□ -1.01
VPS4A-203ENST00000564399 GMCL1P1Q8NEA9 526 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 PPP1R13LQ8WUF5 828 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 MKL1Q969V6 931 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 MTG1Q9BT17 334 aaPredicted RBP8.72□□□□□ -1.01
VPS4A-203ENST00000564399 WDR11Q9BZH6 1224 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 ZNF287Q9HBT7 754 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 MTMR4Q9NYA4 1195 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 ZNF536O15090 1300 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 TANC1Q9C0D5 1861 aa8.72□□□□□ -1.01
VPS4A-203ENST00000564399 PTPRZ1P23471 2315 aaPredicted RBP8.71□□□□□ -1.01
VPS4A-203ENST00000564399 ZDBF2Q9HCK1 2354 aa8.71□□□□□ -1.01
VPS4A-203ENST00000564399 IGKV6D-41A0A0C4DH26 115 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 LCHNA4D1U4 455 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 BAIAP3O94812 1187 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 APPP05067 770 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 MCCP23508 829 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 SLC1A4P43007 532 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 TDO2P48775 406 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 SNAP25P60880 206 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 LEXMQ3ZCV2 418 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 MUM1L1Q5H9M0 696 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 PTCRAQ6ISU1 281 aaPredicted RBP8.71□□□□□ -1.02
VPS4A-203ENST00000564399 TMCO2Q7Z6W1 182 aaPredicted RBP8.71□□□□□ -1.02
VPS4A-203ENST00000564399 OR6J1Q8NGC5 347 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 STAG1Q8WVM7 1258 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 SNX27Q96L92 541 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 PURBQ96QR8 312 aaKnown RBP8.71□□□□□ -1.02
VPS4A-203ENST00000564399 STRBPQ96SI9 672 aaKnown RBP8.71□□□□□ -1.02
VPS4A-203ENST00000564399 CRBNQ96SW2 442 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 HAUS7Q99871 368 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 CYP39A1Q9NYL5 469 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 ADD3Q9UEY8 706 aaKnown RBP8.71□□□□□ -1.02
VPS4A-203ENST00000564399 SYNPO2Q9UMS6 1093 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 LCTP09848 1927 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 RAD50Q92878 1312 aa8.71□□□□□ -1.02
VPS4A-203ENST00000564399 XIRP2A4UGR9 3374 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.7□□□□□ -1.02
VPS4A-203ENST00000564399 GSG1L2A8MUP6 293 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 HMMRO75330 724 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 TSPY3P0CV98 308 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 TSPY8P0CW00 308 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 IL9P15248 144 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 WDR5P61964 334 aaKnown RBP8.7□□□□□ -1.02
VPS4A-203ENST00000564399 NHLH1Q02575 133 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 NFRKBQ6P4R8 1299 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 GIMAP6Q6P9H5 292 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 CCDC155Q8N6L0 562 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.7□□□□□ -1.02
VPS4A-203ENST00000564399 FBXL18Q96ME1 805 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 TGS1Q96RS0 853 aaKnown RBP8.7□□□□□ -1.02
VPS4A-203ENST00000564399 SUGCTQ9HAC7 445 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 CCPG1Q9ULG6 757 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 MTMR7Q9Y216 660 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 SIP14410 1827 aa8.7□□□□□ -1.02
VPS4A-203ENST00000564399 PTPDC1A2A3K4 754 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 DCXO43602 365 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 KPNA6O60684 536 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 RAB11FIP3O75154 756 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 ALDH5A1P51649 535 aaPredicted RBP8.69□□□□□ -1.02
VPS4A-203ENST00000564399 ERVK-21P61565 698 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 DEFB103AP81534 67 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 TFAP4Q01664 338 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 PTPN11Q06124 597 aaPredicted RBP8.69□□□□□ -1.02
VPS4A-203ENST00000564399 BAATQ14032 418 aaPredicted RBP8.69□□□□□ -1.02
VPS4A-203ENST00000564399 PPP2R5BQ15173 497 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 PTGISQ16647 500 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 LRRFIP1Q32MZ4 808 aaKnown RBP8.69□□□□□ -1.02
VPS4A-203ENST00000564399 FAM117BQ6P1L5 589 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 EP400NLQ6ZTU2 488 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms