RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MSRAQ9UJ68 235 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 PNMA2Q9UL42 364 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 YBX2Q9Y2T7 364 aaKnown RBP19.41■□□□□ 0.7
CLN3-208ENST00000561505 MUC3AQ02505 3323 aa19.4■□□□□ 0.7
CLN3-208ENST00000561505 RANBP6O60518 1105 aaKnown RBP19.4■□□□□ 0.7
CLN3-208ENST00000561505 PURAQ00577 322 aaKnown RBP19.4■□□□□ 0.7
CLN3-208ENST00000561505 SYDE2Q5VT97 1194 aa19.4■□□□□ 0.7
CLN3-208ENST00000561505 NSMFQ6X4W1 530 aa19.4■□□□□ 0.7
CLN3-208ENST00000561505 KIAA1211Q6ZU35 1233 aa19.4■□□□□ 0.7
CLN3-208ENST00000561505 RPUSD2Q8IZ73 545 aaKnown RBP19.4■□□□□ 0.7
CLN3-208ENST00000561505 TTC14Q96N46 770 aa19.4■□□□□ 0.7
CLN3-208ENST00000561505 MAF1Q9H063 256 aa19.4■□□□□ 0.7
CLN3-208ENST00000561505 POLR3EQ9NVU0 708 aa19.4■□□□□ 0.7
CLN3-208ENST00000561505 NFIBO00712 420 aa19.39■□□□□ 0.69
CLN3-208ENST00000561505 PSMC6P62333 389 aa19.39■□□□□ 0.69
CLN3-208ENST00000561505 EEPD1Q7L9B9 569 aa19.39■□□□□ 0.69
CLN3-208ENST00000561505 WDR11Q9BZH6 1224 aa19.39■□□□□ 0.69
CLN3-208ENST00000561505 WDR19Q8NEZ3 1342 aa19.39■□□□□ 0.69
CLN3-208ENST00000561505 PFKMP08237 780 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 SUPT20HL2P0C7V6 817 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 PDHBP11177 359 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 PCP11498 1178 aaKnown RBP19.38■□□□□ 0.69
CLN3-208ENST00000561505 POU3F3P20264 500 aaPredicted RBP19.38■□□□□ 0.69
CLN3-208ENST00000561505 SLC16A2P36021 539 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 PDE1AP54750 535 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 CCL23P55773 120 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 RGS22Q8NE09 1264 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 ISY1Q9ULR0 285 aaKnown RBP19.38■□□□□ 0.69
CLN3-208ENST00000561505 PCDHA11Q9Y5I1 949 aa19.38■□□□□ 0.69
CLN3-208ENST00000561505 SCN10AQ9Y5Y9 1956 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 TRANK1O15050 2925 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 A6NJR5 290 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 NKRFO15226 690 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-208ENST00000561505 CPT1AP50416 773 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 MCMDC2Q4G0Z9 681 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 OTOP2Q7RTS6 562 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 DNERQ8NFT8 737 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 CHMP4CQ96CF2 233 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 ASB2Q96Q27 587 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 NKX2-4Q9H2Z4 354 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 SLC28A3Q9HAS3 691 aa19.37■□□□□ 0.69
CLN3-208ENST00000561505 A0A0D9SFI3 127 aa19.36■□□□□ 0.69
CLN3-208ENST00000561505 TNFRSF10AO00220 468 aa19.36■□□□□ 0.69
CLN3-208ENST00000561505 HSPD1P10809 573 aaKnown RBP19.36■□□□□ 0.69
CLN3-208ENST00000561505 PTPN11Q06124 597 aaPredicted RBP19.36■□□□□ 0.69
CLN3-208ENST00000561505 ZNF543Q08ER8 600 aa19.36■□□□□ 0.69
CLN3-208ENST00000561505 HDAC1Q13547 482 aaPredicted RBP19.36■□□□□ 0.69
CLN3-208ENST00000561505 CCDC96Q2M329 555 aa19.36■□□□□ 0.69
CLN3-208ENST00000561505 FAM227BQ96M60 508 aa19.36■□□□□ 0.69
CLN3-208ENST00000561505 MTG1Q9BT17 334 aaPredicted RBP19.36■□□□□ 0.69
CLN3-208ENST00000561505 SLC4A7Q9Y6M7 1214 aa19.36■□□□□ 0.69
CLN3-208ENST00000561505 GBF1Q92538 1859 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 TNKSO95271 1327 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 MYO9BQ13459 2157 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 KPNA6O60684 536 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 NT5C2P49902 561 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 RPS6P62753 249 aaKnown RBP19.35■□□□□ 0.69
CLN3-208ENST00000561505 NFRKBQ6P4R8 1299 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 SLC30A10Q6XR72 485 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 SCLYQ96I15 445 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 TRMT13Q9NUP7 481 aaKnown RBP19.35■□□□□ 0.69
CLN3-208ENST00000561505 THEGQ9P2T0 379 aa19.35■□□□□ 0.69
CLN3-208ENST00000561505 BDP1A6H8Y1 2624 aa19.34■□□□□ 0.69
CLN3-208ENST00000561505 PITPNM1O00562 1244 aa19.34■□□□□ 0.69
CLN3-208ENST00000561505 RFC2P35250 354 aa19.34■□□□□ 0.69
CLN3-208ENST00000561505 ANKRD45Q5TZF3 282 aa19.34■□□□□ 0.69
CLN3-208ENST00000561505 RNF207Q6ZRF8 634 aa19.34■□□□□ 0.69
CLN3-208ENST00000561505 SCFD2Q8WU76 684 aa19.34■□□□□ 0.69
CLN3-208ENST00000561505 GPCPD1Q9NPB8 672 aa19.34■□□□□ 0.69
CLN3-208ENST00000561505 NCOR1O75376 2440 aa19.33■□□□□ 0.69
CLN3-208ENST00000561505 CYP2C9P11712 490 aa19.33■□□□□ 0.68
CLN3-208ENST00000561505 MRPS5P82675 430 aaKnown RBP19.33■□□□□ 0.68
CLN3-208ENST00000561505 TTLL4Q14679 1199 aa19.33■□□□□ 0.68
CLN3-208ENST00000561505 NBPF20Q3BBV1 942 aa19.33■□□□□ 0.68
CLN3-208ENST00000561505 CCDC62Q6P9F0 684 aa19.33■□□□□ 0.68
CLN3-208ENST00000561505 ZNF589Q86UQ0 364 aaPredicted RBP19.33■□□□□ 0.68
CLN3-208ENST00000561505 PHOSPHO2Q8TCD6 241 aa19.33■□□□□ 0.68
CLN3-208ENST00000561505 ANKS1AQ92625 1134 aa19.33■□□□□ 0.68
CLN3-208ENST00000561505 FRMPD2Q68DX3 1309 aaPredicted RBP19.32■□□□□ 0.68
CLN3-208ENST00000561505 PTPDC1A2A3K4 754 aa19.32■□□□□ 0.68
CLN3-208ENST00000561505 ATP2A2P16615 1042 aaKnown RBP19.32■□□□□ 0.68
CLN3-208ENST00000561505 RABGGTBP53611 331 aa19.32■□□□□ 0.68
CLN3-208ENST00000561505 GPATCH4Q5T3I0 446 aaKnown RBP19.32■□□□□ 0.68
CLN3-208ENST00000561505 DGKHQ86XP1 1220 aa19.32■□□□□ 0.68
CLN3-208ENST00000561505 OR6J1Q8NGC5 347 aa19.32■□□□□ 0.68
CLN3-208ENST00000561505 MYOGP15173 224 aa19.31■□□□□ 0.68
CLN3-208ENST00000561505 CALML3P27482 149 aa19.31■□□□□ 0.68
CLN3-208ENST00000561505 NMIQ13287 307 aaPredicted RBP19.31■□□□□ 0.68
CLN3-208ENST00000561505 PPP2R5BQ15173 497 aa19.31■□□□□ 0.68
CLN3-208ENST00000561505 BRDTQ58F21 947 aaPredicted RBP19.31■□□□□ 0.68
CLN3-208ENST00000561505 SESTD1Q86VW0 696 aa19.31■□□□□ 0.68
CLN3-208ENST00000561505 MTMR7Q9Y216 660 aa19.31■□□□□ 0.68
CLN3-208ENST00000561505 REV3LO60673 3130 aa19.31■□□□□ 0.68
CLN3-208ENST00000561505 CCDC171Q6TFL3 1326 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 MYL3P08590 195 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 IQCF3P0C7M6 154 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 RRP1P56182 461 aaKnown RBP19.3■□□□□ 0.68
CLN3-208ENST00000561505 PDE4DQ08499 809 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 RBL2Q08999 1139 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 PPP2R2DQ66LE6 453 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms