RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 AFF3P51826 1226 aaKnown RBP6.99□□□□□ -1.29
VPS13C-210ENST00000561258 TCEA2Q15560 299 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 VHLLQ6RSH7 139 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 TMC3Q7Z5M5 1100 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 ENOX1Q8TC92 643 aaKnown RBP6.99□□□□□ -1.29
VPS13C-210ENST00000561258 HHIPL1Q96JK4 782 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 SLC9A7Q96T83 725 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 PLCD4Q9BRC7 762 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 PHAXQ9H814 394 aaKnown RBP6.99□□□□□ -1.29
VPS13C-210ENST00000561258 TCFL5Q9UL49 500 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 NACADO15069 1562 aa6.99□□□□□ -1.29
VPS13C-210ENST00000561258 ADCY3O60266 1144 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 ASMTLO95671 621 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 KIR2DL1P43626 348 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-210ENST00000561258 KIR2DL2P43627 348 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-210ENST00000561258 SNW1Q13573 536 aaKnown RBP6.98□□□□□ -1.29
VPS13C-210ENST00000561258 KIR3DS1Q14943 382 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 SLC10A6Q3KNW5 377 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 DALRD3Q5D0E6 543 aaKnown RBP6.98□□□□□ -1.29
VPS13C-210ENST00000561258 DAGLBQ8NCG7 672 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 ZSWIM2Q8NEG5 633 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 FEZF2Q8TBJ5 459 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 KLHL6Q8WZ60 621 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 CRTAC1Q9NQ79 661 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 UNC13AQ9UPW8 1703 aa6.98□□□□□ -1.29
VPS13C-210ENST00000561258 RGS13O14921 159 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 N4BP3O15049 544 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 SUSD5O60279 629 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 SASH1O94885 1247 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 UBOX5O94941 541 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 FAM153BP0C7A2 387 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 SKOR2Q2VWA4 1001 aaPredicted RBP6.97□□□□□ -1.29
VPS13C-210ENST00000561258 ZDHHC14Q8IZN3 488 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 STAG1Q8WVM7 1258 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 SPATA9Q9BWV2 254 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 EPN3Q9H201 632 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 PCDHB10Q9UN67 800 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 PLAAQ9Y263 795 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 CD2APQ9Y5K6 639 aa6.97□□□□□ -1.29
VPS13C-210ENST00000561258 SSU72P8A0A1W2PR75 194 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 HRKO00198 91 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 SYPP08247 313 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 PNLIPP16233 465 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 CDR1P51861 262 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 PCBP3P57721 371 aaKnown RBP6.96□□□□□ -1.3
VPS13C-210ENST00000561258 KRTAP10-2P60368 255 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 YBX1P67809 324 aaKnown RBP6.96□□□□□ -1.3
VPS13C-210ENST00000561258 LONRF2Q1L5Z9 754 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 PLEKHG6Q3KR16 790 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 BBS9Q3SYG4 887 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 TMEFF1Q8IYR6 380 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 CXorf38Q8TB03 319 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 DDX56Q9NY93 547 aaKnown RBP6.96□□□□□ -1.3
VPS13C-210ENST00000561258 ZNF214Q9UL59 606 aaPredicted RBP6.96□□□□□ -1.3
VPS13C-210ENST00000561258 MINPP1Q9UNW1 487 aa6.96□□□□□ -1.3
VPS13C-210ENST00000561258 NBPF9Q3BBW0 867 aa6.95□□□□□ -1.3
VPS13C-210ENST00000561258 KIAA1211LQ6NV74 962 aa6.95□□□□□ -1.3
VPS13C-210ENST00000561258 KRT26Q7Z3Y9 468 aa6.95□□□□□ -1.3
VPS13C-210ENST00000561258 ZNF655Q8N720 491 aaPredicted RBP6.95□□□□□ -1.3
VPS13C-210ENST00000561258 SYT8Q8NBV8 401 aa6.95□□□□□ -1.3
VPS13C-210ENST00000561258 LINC00116Q8NCU8 138 aa6.95□□□□□ -1.3
VPS13C-210ENST00000561258 BICRAQ9NZM4 1560 aa6.95□□□□□ -1.3
VPS13C-210ENST00000561258 FAM86C2PA6NEL3 165 aa6.94□□□□□ -1.3
VPS13C-210ENST00000561258 IRS4O14654 1257 aaPredicted RBP6.94□□□□□ -1.3
VPS13C-210ENST00000561258 RTP1P59025 263 aa6.94□□□□□ -1.3
VPS13C-210ENST00000561258 RNF4P78317 190 aa6.94□□□□□ -1.3
VPS13C-210ENST00000561258 SLC7A5Q01650 507 aa6.94□□□□□ -1.3
VPS13C-210ENST00000561258 ZC3H12BQ5HYM0 836 aaKnown RBP6.94□□□□□ -1.3
VPS13C-210ENST00000561258 NBPF12Q5TAG4 269 aaPredicted RBP6.94□□□□□ -1.3
VPS13C-210ENST00000561258 PRRT2Q7Z6L0 340 aaPredicted RBP6.94□□□□□ -1.3
VPS13C-210ENST00000561258 LRRC47Q8N1G4 583 aaKnown RBP6.94□□□□□ -1.3
VPS13C-210ENST00000561258 ZBTB38Q8NAP3 1195 aaPredicted RBP6.94□□□□□ -1.3
VPS13C-210ENST00000561258 MZB1Q8WU39 189 aa6.94□□□□□ -1.3
VPS13C-210ENST00000561258 CHMP4AQ9BY43 222 aa6.94□□□□□ -1.3
VPS13C-210ENST00000561258 IQCA1LA6NCM1 817 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 PRAMEF1O95521 474 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 RAG1P15918 1043 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 POLR2BP30876 1174 aaKnown RBP6.93□□□□□ -1.3
VPS13C-210ENST00000561258 ERVFRD-1P60508 538 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 TM4SF20Q53R12 229 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 CNKSR3Q6P9H4 555 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 NOL8Q76FK4 1167 aaKnown RBP6.93□□□□□ -1.3
VPS13C-210ENST00000561258 FAM129CQ86XR2 697 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 SGSM3Q96HU1 749 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 TYW1Q9NV66 732 aaKnown RBP6.93□□□□□ -1.3
VPS13C-210ENST00000561258 KLHL14Q9P2G3 628 aa6.93□□□□□ -1.3
VPS13C-210ENST00000561258 FADS2P1A8MWK0 482 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 PARNO95453 639 aaKnown RBP6.92□□□□□ -1.3
VPS13C-210ENST00000561258 CCNFP41002 786 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 GNPTABQ3T906 1256 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 HSF5Q4G112 596 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-210ENST00000561258 DBX2Q6ZNG2 339 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 GGNQ86UU5 652 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 IGDCC3Q8IVU1 814 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 NINJ1Q92982 152 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 MFSD3Q96ES6 412 aa6.92□□□□□ -1.3
VPS13C-210ENST00000561258 ZNF512BQ96KM6 892 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-210ENST00000561258 GPR55Q9Y2T6 319 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-210ENST00000561258 CELA3BP08861 270 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 PMS1P54277 932 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms