RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 MRPL11Q9Y3B7 192 aaKnown RBP16.43■□□□□ 0.22
TPM1-223ENST00000560445 KPNA6O60684 536 aa16.42■□□□□ 0.22
TPM1-223ENST00000560445 GSPT1P15170 499 aaKnown RBP16.42■□□□□ 0.22
TPM1-223ENST00000560445 CHMLP26374 656 aa16.42■□□□□ 0.22
TPM1-223ENST00000560445 RPS6P62753 249 aaKnown RBP16.42■□□□□ 0.22
TPM1-223ENST00000560445 PPIGQ13427 754 aaKnown RBP eCLIP16.42■□□□□ 0.221e-7■■□□□ 14.5
TPM1-223ENST00000560445 PPP2R5BQ15173 497 aa16.42■□□□□ 0.22
TPM1-223ENST00000560445 DUSP28Q4G0W2 176 aa16.42■□□□□ 0.22
TPM1-223ENST00000560445 FBXO16Q8IX29 292 aaPredicted RBP16.42■□□□□ 0.22
TPM1-223ENST00000560445 SCFD2Q8WU76 684 aa16.42■□□□□ 0.22
TPM1-223ENST00000560445 GPHNQ9NQX3 736 aaPredicted RBP16.42■□□□□ 0.22
TPM1-223ENST00000560445 TRIM43BA6NCK2 446 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 GOLGA8HP0CJ92 632 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 PDE4AP27815 886 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 USH1GQ495M9 461 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 FBXO11Q86XK2 927 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 ADGRF4Q8IZF3 695 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 TMEM199Q8N511 208 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 SAMD3Q8N6K7 520 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 NCOA7Q8NI08 942 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 CLEC4DQ8WXI8 215 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 TRIM43Q96BQ3 446 aaPredicted RBP16.41■□□□□ 0.22
TPM1-223ENST00000560445 AMNQ9BXJ7 453 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 WDR11Q9BZH6 1224 aa16.41■□□□□ 0.22
TPM1-223ENST00000560445 MTIF3Q9H2K0 278 aaKnown RBP16.41■□□□□ 0.22
TPM1-223ENST00000560445 MAP3K20Q9NYL2 800 aaKnown RBP16.41■□□□□ 0.22
TPM1-223ENST00000560445 MYADML2A6NDP7 307 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 DYNC1LI2O43237 492 aaPredicted RBP16.4■□□□□ 0.22
TPM1-223ENST00000560445 TIMP1P01033 207 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 SMPD1P17405 629 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 FAAP100Q0VG06 881 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 TTLL4Q14679 1199 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 ZNF697Q5TEC3 545 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 TAPT1Q6NXT6 567 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 SLC30A10Q6XR72 485 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 EEPD1Q7L9B9 569 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 NSUN6Q8TEA1 469 aaKnown RBP16.4■□□□□ 0.22
TPM1-223ENST00000560445 IWS1Q96ST2 819 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 MYH6P13533 1939 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 LAMA3Q16787 3333 aa16.4■□□□□ 0.22
TPM1-223ENST00000560445 RBM47A0AV96 593 aaKnown RBP16.39■□□□□ 0.21
TPM1-223ENST00000560445 SGSM2O43147 1006 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 ADCY6O43306 1168 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 SUPT20HL2P0C7V6 817 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 EDNRBP24530 442 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 CDK7P50613 346 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 SMAD3P84022 425 aaKnown RBP16.39■□□□□ 0.21
TPM1-223ENST00000560445 MFSD5Q6N075 450 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 CXCL17Q6UXB2 119 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 SH3RF1Q7Z6J0 888 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 RNPC3Q96LT9 517 aaKnown RBP16.39■□□□□ 0.21
TPM1-223ENST00000560445 MTA3Q9BTC8 594 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 UBA5Q9GZZ9 404 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 TBX21Q9UL17 535 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 ASTN1O14525 1302 aa16.39■□□□□ 0.21
TPM1-223ENST00000560445 TMEM265A0A087WTH1 108 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.38■□□□□ 0.21
TPM1-223ENST00000560445 KLRF2D3W0D1 207 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 IFIT3O14879 490 aaKnown RBP16.38■□□□□ 0.21
TPM1-223ENST00000560445 ITGA7Q13683 1181 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 WTAPQ15007 396 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 SHHQ15465 462 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 PSRC1Q6PGN9 363 aaPredicted RBP16.38■□□□□ 0.21
TPM1-223ENST00000560445 CASC1Q6TDU7 716 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 CATIPQ7Z7H3 387 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 FAM126BQ8IXS8 530 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 STXBP5LQ9Y2K9 1186 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 LCTP09848 1927 aa16.38■□□□□ 0.21
TPM1-223ENST00000560445 ZBTB5O15062 677 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 CTAGE5O15320 804 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 CYP21A2P08686 494 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 BEX3Q00994 111 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 SEC23AQ15436 765 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 STXBP2Q15833 593 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 QRICH1Q2TAL8 776 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 TMTC2Q8N394 836 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 SLC43A3Q8NBI5 491 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 OR6J1Q8NGC5 347 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 MTG1Q9BT17 334 aaPredicted RBP16.37■□□□□ 0.21
TPM1-223ENST00000560445 PDGFCQ9NRA1 345 aa16.37■□□□□ 0.21
TPM1-223ENST00000560445 TXNP10599 105 aaKnown RBP16.36■□□□□ 0.21
TPM1-223ENST00000560445 KIF5BP33176 963 aa16.36■□□□□ 0.21
TPM1-223ENST00000560445 ARHGEF16Q5VV41 709 aa16.36■□□□□ 0.21
TPM1-223ENST00000560445 KCNV1Q6PIU1 500 aa16.36■□□□□ 0.21
TPM1-223ENST00000560445 CENPQQ7L2Z9 268 aaPredicted RBP16.36■□□□□ 0.21
TPM1-223ENST00000560445 RMDN3Q96TC7 470 aa16.36■□□□□ 0.21
TPM1-223ENST00000560445 JMJD4Q9H9V9 463 aa16.36■□□□□ 0.21
TPM1-223ENST00000560445 VAT1LQ9HCJ6 419 aa16.36■□□□□ 0.21
TPM1-223ENST00000560445 MTMR10Q9NXD2 777 aa16.36■□□□□ 0.21
TPM1-223ENST00000560445 SZT2Q5T011 3432 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 E7EWF7 191 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 GRM4Q14833 912 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 TMEM67Q5HYA8 995 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 RNF20Q5VTR2 975 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 SYTL5Q8TDW5 730 aaPredicted RBP16.35■□□□□ 0.21
TPM1-223ENST00000560445 MAP4K1Q92918 833 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 MAP3K14Q99558 947 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 LZTS2Q9BRK4 669 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 HIPK3Q9H422 1215 aa16.35■□□□□ 0.21
TPM1-223ENST00000560445 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms