RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ELNP15502 786 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 HSD17B4P51659 736 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 COL13A1Q5TAT6 717 aaPredicted RBP25.12■■□□□ 1.61
SNX1-210ENST00000560260 FBXO46Q6PJ61 603 aaPredicted RBP25.12■■□□□ 1.61
SNX1-210ENST00000560260 RNF207Q6ZRF8 634 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 TRIM22Q8IYM9 498 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 RGS22Q8NE09 1264 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 RAET1EQ8TD07 263 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 TRIB2Q92519 343 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 MCOLN1Q9GZU1 580 aa25.12■■□□□ 1.61
SNX1-210ENST00000560260 SOWAHBA6NEL2 793 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 POTEB2H3BUK9 544 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 DEXIO95424 95 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 IGHA2P01877 340 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 XRCC5P13010 732 aaKnown RBP25.11■■□□□ 1.61
SNX1-210ENST00000560260 CALML3P27482 149 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 AKAP17AQ02040 695 aaKnown RBP25.11■■□□□ 1.61
SNX1-210ENST00000560260 TRAF1Q13077 416 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 DPP9Q86TI2 863 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 SMARCC2Q8TAQ2 1214 aa25.11■■□□□ 1.61
SNX1-210ENST00000560260 SYTL5Q8TDW5 730 aaPredicted RBP25.11■■□□□ 1.61
SNX1-210ENST00000560260 ORC3Q9UBD5 711 aaPredicted RBP25.11■■□□□ 1.61
SNX1-210ENST00000560260 hCG_1984214I3L0E3 225 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 ADAMTS3O15072 1205 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 CFBP00751 764 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 NAPAP54920 295 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 PPP1R18Q6NYC8 613 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 MCF2L2Q86YR7 1114 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 ZNF713Q8N859 430 aaPredicted RBP25.1■■□□□ 1.61
SNX1-210ENST00000560260 MAML3Q96JK9 1138 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 VPS54Q9P1Q0 977 aa25.1■■□□□ 1.61
SNX1-210ENST00000560260 DDX49Q9Y6V7 483 aaKnown RBP25.1■■□□□ 1.61
SNX1-210ENST00000560260 LRRC37A2A6NM11 1700 aa25.09■■□□□ 1.61
SNX1-210ENST00000560260 ADCY3O60266 1144 aa25.09■■□□□ 1.61
SNX1-210ENST00000560260 HOXA13P31271 388 aaPredicted RBP25.09■■□□□ 1.61
SNX1-210ENST00000560260 SNX21Q969T3 373 aa25.09■■□□□ 1.61
SNX1-210ENST00000560260 TRIM32Q13049 653 aa25.08■■□□□ 1.6
SNX1-210ENST00000560260 PKN2Q16513 984 aaKnown RBP25.08■■□□□ 1.6
SNX1-210ENST00000560260 SH3TC2Q8TF17 1288 aa25.08■■□□□ 1.6
SNX1-210ENST00000560260 DIS3Q9Y2L1 958 aaKnown RBP25.08■■□□□ 1.6
SNX1-210ENST00000560260 MEIS2O14770 477 aa25.07■■□□□ 1.6
SNX1-210ENST00000560260 UBE2SQ16763 222 aa25.07■■□□□ 1.6
SNX1-210ENST00000560260 USP17L6PQ6QN14 398 aa25.07■■□□□ 1.6
SNX1-210ENST00000560260 SLAIN1Q8ND83 568 aa25.07■■□□□ 1.6
SNX1-210ENST00000560260 PXYLP1Q8TE99 480 aa25.07■■□□□ 1.6
SNX1-210ENST00000560260 LLPHQ9BRT6 129 aaKnown RBP25.07■■□□□ 1.6
SNX1-210ENST00000560260 GJB4Q9NTQ9 266 aa25.07■■□□□ 1.6
SNX1-210ENST00000560260 MCM3APO60318 1980 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 GCOM1H8Y6P7 765 aaPredicted RBP25.06■■□□□ 1.6
SNX1-210ENST00000560260 POLR2MP0CAP2 368 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 GRK4P32298 578 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 CUL4AQ13619 759 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 OLFML2BQ68BL8 750 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 TAAR1Q96RJ0 339 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 MAF1Q9H063 256 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 PSTPIP2Q9H939 334 aa25.06■■□□□ 1.6
SNX1-210ENST00000560260 ESYT2A0FGR8 921 aa25.05■■□□□ 1.6
SNX1-210ENST00000560260 ALDH5A1P51649 535 aaPredicted RBP25.05■■□□□ 1.6
SNX1-210ENST00000560260 ZNF467Q7Z7K2 595 aaPredicted RBP25.05■■□□□ 1.6
SNX1-210ENST00000560260 RIC8AQ9NPQ8 531 aa25.05■■□□□ 1.6
SNX1-210ENST00000560260 SLC5A4Q9NY91 659 aa25.05■■□□□ 1.6
SNX1-210ENST00000560260 SMCO2A6NFE2 343 aa25.04■■□□□ 1.6
SNX1-210ENST00000560260 K7ELQ4 463 aaPredicted RBP25.04■■□□□ 1.6
SNX1-210ENST00000560260 PIK3CDO00329 1044 aa25.04■■□□□ 1.6
SNX1-210ENST00000560260 CYP2C19P33261 490 aa25.04■■□□□ 1.6
SNX1-210ENST00000560260 ADCY7P51828 1080 aa25.04■■□□□ 1.6
SNX1-210ENST00000560260 NPY5RQ15761 445 aa25.04■■□□□ 1.6
SNX1-210ENST00000560260 ALG1Q9BT22 464 aa25.04■■□□□ 1.6
SNX1-210ENST00000560260 ZMYND12Q9H0C1 365 aa25.04■■□□□ 1.6
SNX1-210ENST00000560260 HMGCRP04035 888 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 INHAP05111 366 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 MAMDC4Q6UXC1 1216 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 FCHSD1Q86WN1 690 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 SAMD3Q8N6K7 520 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 CUL5Q93034 780 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 TINF2Q9BSI4 451 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 SH3GLB2Q9NR46 395 aa25.03■■□□□ 1.6
SNX1-210ENST00000560260 MAP3K20Q9NYL2 800 aaKnown RBP25.03■■□□□ 1.6
SNX1-210ENST00000560260 FOSBP53539 338 aa25.02■■□□□ 1.6
SNX1-210ENST00000560260 SLC9C1Q4G0N8 1177 aa25.02■■□□□ 1.6
SNX1-210ENST00000560260 ARMCX2Q7L311 632 aa25.02■■□□□ 1.6
SNX1-210ENST00000560260 TRMT44Q8IYL2 757 aaKnown RBP25.02■■□□□ 1.6
SNX1-210ENST00000560260 CCDC148Q8NFR7 591 aa25.02■■□□□ 1.6
SNX1-210ENST00000560260 TMEM260Q9NX78 707 aa25.02■■□□□ 1.6
SNX1-210ENST00000560260 KCNJ14Q9UNX9 436 aa25.02■■□□□ 1.6
SNX1-210ENST00000560260 FRMPD4Q14CM0 1322 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 SNAI1O95863 264 aaPredicted RBP25.01■■□□□ 1.59
SNX1-210ENST00000560260 EDNRBP24530 442 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 CLK2P49760 499 aaKnown RBP25.01■■□□□ 1.59
SNX1-210ENST00000560260 MAP3K21Q5TCX8 1036 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 TRPV1Q8NER1 839 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 DNERQ8NFT8 737 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 IL31RAQ8NI17 732 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 CCDC12Q8WUD4 166 aaPredicted RBP25.01■■□□□ 1.59
SNX1-210ENST00000560260 ARMC5Q96C12 935 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 RMDN3Q96TC7 470 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 PXMP2Q9NR77 195 aa25.01■■□□□ 1.59
SNX1-210ENST00000560260 RPTORQ8N122 1335 aa25■■□□□ 1.59
SNX1-210ENST00000560260 SYNGAP1Q96PV0 1343 aa25■■□□□ 1.59
SNX1-210ENST00000560260 EIF2AK2P19525 551 aaKnown RBP25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms