RNA–Protein interactions for RNA: ENST00000560243.5

RABGGTA-216, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 704 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-216ENST00000560243 PIGSQ96S52 555 aa13.56□□□□□ -0.24
RABGGTA-216ENST00000560243 PRO3102Q9H379 93 aa13.56□□□□□ -0.24
RABGGTA-216ENST00000560243 PPP4R2Q9NY27 417 aa13.56□□□□□ -0.24
RABGGTA-216ENST00000560243 RBM27Q9P2N5 1060 aaKnown RBP13.56□□□□□ -0.24
RABGGTA-216ENST00000560243 ABCB11O95342 1321 aa13.56□□□□□ -0.24
RABGGTA-216ENST00000560243 LAMA3Q16787 3333 aa13.56□□□□□ -0.24
RABGGTA-216ENST00000560243 C6orf222P0C671 652 aaPredicted RBP13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 SMPD1P17405 629 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 RTP1P59025 263 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 TNFAIP2Q03169 654 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 KCNA10Q16322 511 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 CCSAPQ6IQ19 270 aaPredicted RBP13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 RGS22Q8NE09 1264 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 SYTL5Q8TDW5 730 aaPredicted RBP13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 PIBF1Q8WXW3 757 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 UPF3AQ9H1J1 476 aaKnown RBP13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 RIOX1Q9H6W3 641 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 ADD3Q9UEY8 706 aaKnown RBP13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 ATP11BQ9Y2G3 1177 aa13.55□□□□□ -0.24
RABGGTA-216ENST00000560243 A0A1W2PQ45 241 aaPredicted RBP13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 A0A1W2PQY0 241 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 ZBTB5O15062 677 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 EDNRBP24530 442 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 ACLYP53396 1101 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 GJA9P57773 515 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 BEX3Q00994 111 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 SNX17Q15036 470 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 TRIM60Q495X7 471 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 RNF20Q5VTR2 975 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 NFXL1Q6ZNB6 911 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 NOL8Q76FK4 1167 aaKnown RBP13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 TMEM87BQ96K49 555 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 TAAR1Q96RJ0 339 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 AMNQ9BXJ7 453 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 VTA1Q9NP79 307 aa13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 GNEQ9Y223 722 aaKnown RBP13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 MRPL11Q9Y3B7 192 aaKnown RBP13.54□□□□□ -0.24
RABGGTA-216ENST00000560243 DDAH1O94760 285 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 PLEKHA8P1O95397 391 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 CENPBP07199 599 aaPredicted RBP13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 EXOSC10Q01780 885 aaKnown RBP13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 TSGA10IPQ3SY00 556 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 GNASQ5JWF2 1037 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 TLK2Q86UE8 772 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 CMTR1Q8N1G2 835 aaKnown RBP13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 NEK1Q96PY6 1258 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 GDF15Q99988 308 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 TSEN34Q9BSV6 310 aaKnown RBP13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 MTA3Q9BTC8 594 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 PCDHA1Q9Y5I3 950 aa13.53□□□□□ -0.24
RABGGTA-216ENST00000560243 SZT2Q5T011 3432 aa13.52□□□□□ -0.24
RABGGTA-216ENST00000560243 CCDC69A6NI79 296 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 DYNC1LI2O43237 492 aaPredicted RBP13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 CFBP00751 764 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 ASGR1P07306 291 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 CPA1P15085 419 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 CST5P28325 142 aaPredicted RBP13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 LIFRP42702 1097 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 MAGEA10P43363 369 aaPredicted RBP13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 TLE2Q04725 743 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 PDE4DQ08499 809 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 IQSEC1Q6DN90 963 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 MCF2L2Q86YR7 1114 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 SRBD1Q8N5C6 995 aaKnown RBP13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 DNERQ8NFT8 737 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 CTCFLQ8NI51 663 aaPredicted RBP13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 MAP3K14Q99558 947 aa13.52□□□□□ -0.25
RABGGTA-216ENST00000560243 LOC102724159A0A0B4J2E5 919 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 PNMA6FA0A0J9YX94 578 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 RBM47A0AV96 593 aaKnown RBP13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 HOXA13P31271 388 aaPredicted RBP13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 HSD17B4P51659 736 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 NKX3-2P78367 333 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 MDM2Q00987 491 aaPredicted RBP13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 PWP2Q15269 919 aaKnown RBP13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 ERICH6BQ5W0A0 696 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 DHX32Q7L7V1 743 aaKnown RBP13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 SH3RF1Q7Z6J0 888 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 SGMS1Q86VZ5 419 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 TMTC2Q8N394 836 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 KCNB2Q92953 911 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 RMDN3Q96TC7 470 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 SPZ1Q9BXG8 430 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 WDR11Q9BZH6 1224 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 SPC25Q9HBM1 224 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 BRPF3Q9ULD4 1205 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 SNX14Q9Y5W7 946 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 SLC12A7Q9Y666 1083 aa13.51□□□□□ -0.25
RABGGTA-216ENST00000560243 LAMA2P24043 3122 aaKnown RBP13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 LTBP2Q14767 1821 aa13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 hCG_1642624A0A1W2PR95 340 aa13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 MOXD2PA6NHM9 499 aa13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 PQBP1O60828 265 aaKnown RBP13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 ARIH2O95376 493 aa13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 EIF2AK2P19525 551 aaKnown RBP13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 KIF5BP33176 963 aa13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 HSPA4P34932 840 aa13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 FXR1P51114 621 aaKnown RBP eCLIP13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 GHRHRQ02643 423 aa13.5□□□□□ -0.25
RABGGTA-216ENST00000560243 FSCN1Q16658 493 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms