RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 PHF20L1A8MW92 1017 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 UBE2Q2LH0YL09 131 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 LZTS3O60299 673 aaPredicted RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 SLC3A2P08195 630 aaKnown RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 MCM5P33992 734 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 ANP32AP39687 249 aaKnown RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 FGD1P98174 961 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 ATP2B2Q01814 1243 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 PDE4BQ07343 736 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 TRDNQ13061 729 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 TNFAIP1Q13829 316 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 RAB3GAP1Q15042 981 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 SEC23AQ15436 765 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 ZYXQ15942 572 aaKnown RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 ME3Q16798 604 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 TMEM132AQ24JP5 1023 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 CERKLQ49MI3 558 aaPredicted RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 C4orf17Q53FE4 359 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 EFHC2Q5JST6 749 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 FKBP1CQ5VVH2 108 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 ZNF385CQ66K41 422 aaPredicted RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 RCSD1Q6JBY9 416 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 CCDC83Q8IWF9 413 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 IGDCC4Q8TDY8 1250 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 ESR2Q92731 530 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 CLMNQ96JQ2 1002 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 WRNIP1Q96S55 665 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 PITPNM2Q9BZ72 1349 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 KRT23Q9C075 422 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 EHD4Q9H223 541 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 DHX36Q9H2U1 1008 aaKnown RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 RNF41Q9H4P4 317 aaPredicted RBP6.12□□□□□ -1.43
SPG11-220ENST00000559933 CNNM2Q9H8M5 875 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 NOD1Q9Y239 953 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 MYH4Q9Y623 1939 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 PHIPQ8WWQ0 1821 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 PLIN4Q96Q06 1357 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 FRMPD2Q68DX3 1309 aaPredicted RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 IGKV6D-41A0A0C4DH26 115 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 A0A1W2PRG0 241 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 JAK2O60674 1132 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 EIF5BO60841 1220 aaKnown RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 INHAP05111 366 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 VEGFAP15692 232 aaPredicted RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 MX2P20592 715 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 ECE1P42892 770 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 CCT2P78371 535 aaKnown RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 LBRQ14739 615 aaKnown RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 WTAPQ15007 396 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 ABCB5Q2M3G0 1257 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 KIAA1755Q5JYT7 1200 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 TATDN1Q6P1N9 297 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 NFXL1Q6ZNB6 911 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 METTL16Q86W50 562 aaKnown RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 LDHDQ86WU2 507 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 MICU3Q86XE3 530 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 SIAH1Q8IUQ4 282 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 HSCBQ8IWL3 235 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 ZNF444Q8N0Y2 327 aaPredicted RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 CMTR1Q8N1G2 835 aaKnown RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 NEDD1Q8NHV4 660 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 ACER1Q8TDN7 264 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 POM121Q96HA1 1249 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 TMX3Q96JJ7 454 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 UBAC1Q9BSL1 405 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 NIFKQ9BYG3 293 aaKnown RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 CPVLQ9H3G5 476 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 SWAP70Q9UH65 585 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 ZBTB21Q9ULJ3 1066 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 STX8Q9UNK0 236 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 ANGEL1Q9UNK9 670 aaKnown RBP6.11□□□□□ -1.43
SPG11-220ENST00000559933 HRH3Q9Y5N1 445 aa6.11□□□□□ -1.43
SPG11-220ENST00000559933 K7ELQ4 463 aaPredicted RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 BACH1O14867 736 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 USP2O75604 605 aaPredicted RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 PLEKHA8P1O95397 391 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 CTDNEP1O95476 244 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 STAU1O95793 577 aaKnown RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 HMGB1P09429 215 aaKnown RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 GOLGA8HP0CJ92 632 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 EEF2P13639 858 aaKnown RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 TAL1P17542 331 aaPredicted RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 MSX1P28360 303 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 CDC27P30260 824 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 CAP2P40123 477 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 PLA2G4AP47712 749 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 MMP14P50281 582 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 ICA1Q05084 483 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 SCRN1Q12765 414 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 VGLL4Q14135 290 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 GAS6Q14393 721 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 SLC35G1Q2M3R5 365 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 IFIT1BQ5T764 474 aaKnown RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 APOA5Q6Q788 366 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 PNMA8AQ86V59 439 aaPredicted RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 ZNF654Q8IZM8 581 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 SPICE1Q8N0Z3 855 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.1□□□□□ -1.43
SPG11-220ENST00000559933 NUP133Q8WUM0 1156 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 PIBF1Q8WXW3 757 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms