RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SLC4A7Q9Y6M7 1214 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 DNAH12Q6ZR08 3092 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 GRIN2DO15399 1336 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 RAD50Q92878 1312 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 FOXP2O15409 715 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 PFKMP08237 780 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 IGFBP4P22692 258 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 ALDH5A1P51649 535 aaPredicted RBP10.79□□□□□ -0.68
HDDC3-204ENST00000559834 PSMC6P62333 389 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 VPS53Q5VIR6 699 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 RNF207Q6ZRF8 634 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 MFSD6Q6ZSS7 791 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 PURBQ96QR8 312 aaKnown RBP10.79□□□□□ -0.68
HDDC3-204ENST00000559834 ALDH8A1Q9H2A2 487 aaPredicted RBP10.79□□□□□ -0.68
HDDC3-204ENST00000559834 TSPYL2Q9H2G4 693 aaPredicted RBP10.79□□□□□ -0.68
HDDC3-204ENST00000559834 PRDM6Q9NQX0 595 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 CXXC1Q9P0U4 656 aaPredicted RBP10.79□□□□□ -0.68
HDDC3-204ENST00000559834 FRMPD2Q68DX3 1309 aaPredicted RBP10.79□□□□□ -0.68
HDDC3-204ENST00000559834 MYO9BQ13459 2157 aa10.79□□□□□ -0.68
HDDC3-204ENST00000559834 A0A0C4DFX4 3053 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 RBM47A0AV96 593 aaKnown RBP10.78□□□□□ -0.68
HDDC3-204ENST00000559834 MYL3P08590 195 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 HSPD1P10809 573 aaKnown RBP10.78□□□□□ -0.68
HDDC3-204ENST00000559834 ACTN1P12814 892 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 CALML3P27482 149 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 NT5C2P49902 561 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 PDE1AP54750 535 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 MFAP1P55081 439 aaKnown RBP10.78□□□□□ -0.68
HDDC3-204ENST00000559834 PURAQ00577 322 aaKnown RBP10.78□□□□□ -0.68
HDDC3-204ENST00000559834 PDE4DQ08499 809 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 USP38Q8NB14 1042 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 RETREG2Q8NC44 543 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 DNERQ8NFT8 737 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 OR6J1Q8NGC5 347 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 MTG1Q9BT17 334 aaPredicted RBP10.78□□□□□ -0.68
HDDC3-204ENST00000559834 MAF1Q9H063 256 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 NKX2-4Q9H2Z4 354 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 RNF41Q9H4P4 317 aaPredicted RBP10.78□□□□□ -0.68
HDDC3-204ENST00000559834 PCDHA11Q9Y5I1 949 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 DDX49Q9Y6V7 483 aaKnown RBP10.78□□□□□ -0.68
HDDC3-204ENST00000559834 UMODL1Q5DID0 1318 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 SALL3Q9BXA9 1300 aa10.78□□□□□ -0.68
HDDC3-204ENST00000559834 ZBBXA8MT70 800 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 TNFRSF10AO00220 468 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 NFIBO00712 420 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 PDHBP11177 359 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 ATP2A2P16615 1042 aaKnown RBP10.77□□□□□ -0.69
HDDC3-204ENST00000559834 PTGS1P23219 599 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 MRPS5P82675 430 aaKnown RBP10.77□□□□□ -0.69
HDDC3-204ENST00000559834 PTPN11Q06124 597 aaPredicted RBP10.77□□□□□ -0.69
HDDC3-204ENST00000559834 ZNF543Q08ER8 600 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 HDAC1Q13547 482 aaPredicted RBP10.77□□□□□ -0.69
HDDC3-204ENST00000559834 PPP2R5BQ15173 497 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 CCDC178Q5BJE1 867 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 TMEM63BQ5T3F8 832 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 GPATCH4Q5T3I0 446 aaKnown RBP10.77□□□□□ -0.69
HDDC3-204ENST00000559834 NFRKBQ6P4R8 1299 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 RGS22Q8NE09 1264 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 IL27Q8NEV9 243 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 SCFD2Q8WU76 684 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 CLEC4DQ8WXI8 215 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 ESR2Q92731 530 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 FAM227BQ96M60 508 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 ASB2Q96Q27 587 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 WNT8AQ9H1J5 351 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 THEGQ9P2T0 379 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 TNKSO95271 1327 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 ZMYM6O95789 1325 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 WDR19Q8NEZ3 1342 aa10.77□□□□□ -0.69
HDDC3-204ENST00000559834 TRIM6-TRIM34B2RNG4 842 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 TXNP10599 105 aaKnown RBP10.76□□□□□ -0.69
HDDC3-204ENST00000559834 CYP2C9P11712 490 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 RFC2P35250 354 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 HAND2P61296 217 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 RPS6P62753 249 aaKnown RBP10.76□□□□□ -0.69
HDDC3-204ENST00000559834 TTLL4Q14679 1199 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 CCDC85BQ15834 202 aaPredicted RBP10.76□□□□□ -0.69
HDDC3-204ENST00000559834 NBPF20Q3BBV1 942 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 FAM47CQ5HY64 1035 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 TMEM67Q5HYA8 995 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 PPP2R2DQ66LE6 453 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 RASGRP2Q7LDG7 609 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 DEFB128Q7Z7B8 93 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 DGKHQ86XP1 1220 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 RILPL2Q969X0 211 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 SCLYQ96I15 445 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 TRMT13Q9NUP7 481 aaKnown RBP10.76□□□□□ -0.69
HDDC3-204ENST00000559834 NOD1Q9Y239 953 aa10.76□□□□□ -0.69
HDDC3-204ENST00000559834 YBX2Q9Y2T7 364 aaKnown RBP10.76□□□□□ -0.69
HDDC3-204ENST00000559834 A0A0D9SFI3 127 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 A6NJR5 290 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 KIF28PB7ZC32 967 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 ZNF213O14771 459 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 SNHG28P0DPA3 235 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 EDNRBP24530 442 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 RABGGTBP53611 331 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 NMIQ13287 307 aaPredicted RBP10.75□□□□□ -0.69
HDDC3-204ENST00000559834 BFSP2Q13515 415 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 AAMPQ13685 434 aa10.75□□□□□ -0.69
HDDC3-204ENST00000559834 ADGRE1Q14246 886 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms