RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 R3HDMLQ9H3Y0 253 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 EFCC1Q9HA90 598 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 HOMER2Q9NSB8 354 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 ADD3Q9UEY8 706 aaKnown RBP10.61□□□□□ -0.71
LDLR-210ENST00000559340 RIPK3Q9Y572 518 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 MCM3APO60318 1980 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 LOC102724159A0A0B4J2E5 919 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 POTEB2H3BUK9 544 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 STXBP3O00186 592 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 JAK2O60674 1132 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 CFBP00751 764 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 FOSP01100 380 aaPredicted RBP10.6□□□□□ -0.71
LDLR-210ENST00000559340 GJB2P29033 226 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 RGS2P41220 211 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 ST3GAL1Q11201 340 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 PWP2Q15269 919 aaKnown RBP10.6□□□□□ -0.71
LDLR-210ENST00000559340 LARP1BQ659C4 914 aaKnown RBP10.6□□□□□ -0.71
LDLR-210ENST00000559340 WWC2Q6AWC2 1192 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 POTEEQ6S8J3 1075 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 NSMFQ6X4W1 530 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 CTU1Q7Z7A3 348 aaKnown RBP10.6□□□□□ -0.71
LDLR-210ENST00000559340 DPP9Q86TI2 863 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 TRMT44Q8IYL2 757 aaKnown RBP10.6□□□□□ -0.71
LDLR-210ENST00000559340 ZNF296Q8WUU4 475 aaPredicted RBP10.6□□□□□ -0.71
LDLR-210ENST00000559340 GPKOWQ92917 476 aaPredicted RBP eCLIP10.6□□□□□ -0.71
LDLR-210ENST00000559340 ZMYND12Q9H0C1 365 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 PORCNQ9H237 461 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 RIC8AQ9NPQ8 531 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 PCDH10Q9P2E7 1040 aa10.6□□□□□ -0.71
LDLR-210ENST00000559340 DIS3Q9Y2L1 958 aaKnown RBP10.6□□□□□ -0.71
LDLR-210ENST00000559340 ZNF236Q9UL36 1845 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 MYH7BA7E2Y1 1941 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 SPDYE3A6NKU9 549 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 H3BQV1 296 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 PIK3CDO00329 1044 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 PPP1R11O60927 126 aaPredicted RBP10.59□□□□□ -0.71
LDLR-210ENST00000559340 FDPSP14324 419 aaKnown RBP10.59□□□□□ -0.71
LDLR-210ENST00000559340 GHRHRQ02643 423 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 PKN2Q16513 984 aaKnown RBP10.59□□□□□ -0.71
LDLR-210ENST00000559340 MUM1L1Q5H9M0 696 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 CD99L2Q8TCZ2 262 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 CLEC4DQ8WXI8 215 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 TSHZ2Q9NRE2 1034 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 VPS54Q9P1Q0 977 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 PCDHA4Q9UN74 947 aa10.59□□□□□ -0.71
LDLR-210ENST00000559340 RBM19Q9Y4C8 960 aaKnown RBP10.59□□□□□ -0.71
LDLR-210ENST00000559340 KIAA1217Q5T5P2 1943 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 NFIBO00712 420 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 PEX10O60683 326 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 PPFIA3O75145 1194 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 HSD17B4P51659 736 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 RPS6P62753 249 aaKnown RBP10.58□□□□□ -0.72
LDLR-210ENST00000559340 MAP2K5Q13163 448 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 AP3B2Q13367 1082 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 GNL2Q13823 731 aaKnown RBP10.58□□□□□ -0.72
LDLR-210ENST00000559340 BAATQ14032 418 aaPredicted RBP10.58□□□□□ -0.72
LDLR-210ENST00000559340 GRB14Q14449 540 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 MORN1Q5T089 497 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 BLIDQ8IZY5 108 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 REXO1Q8N1G1 1221 aaKnown RBP10.58□□□□□ -0.72
LDLR-210ENST00000559340 DAGLBQ8NCG7 672 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 DNERQ8NFT8 737 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 A1CFQ9NQ94 594 aaKnown RBP10.58□□□□□ -0.72
LDLR-210ENST00000559340 CYP39A1Q9NYL5 469 aa10.58□□□□□ -0.72
LDLR-210ENST00000559340 ASB14A6NK59 587 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 HOXC6P09630 235 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 XRCC5P13010 732 aaKnown RBP10.57□□□□□ -0.72
LDLR-210ENST00000559340 ADORA2AP29274 412 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 KRT2P35908 639 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 KRT40Q6A162 431 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 ZNF467Q7Z7K2 595 aaPredicted RBP10.57□□□□□ -0.72
LDLR-210ENST00000559340 MSL3Q8N5Y2 521 aaKnown RBP10.57□□□□□ -0.72
LDLR-210ENST00000559340 FBXO18Q8NFZ0 1043 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 RAET1EQ8TD07 263 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 SYTL5Q8TDW5 730 aaPredicted RBP10.57□□□□□ -0.72
LDLR-210ENST00000559340 NSUN6Q8TEA1 469 aaKnown RBP10.57□□□□□ -0.72
LDLR-210ENST00000559340 TRIM47Q96LD4 638 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 IWS1Q96ST2 819 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 PHF20Q9BVI0 1012 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 SRRDQ9UH36 339 aa10.57□□□□□ -0.72
LDLR-210ENST00000559340 DNAJC25-GNG10A0A024R161 153 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 CCDC194A0A1B0GVG4 234 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 MMP1P03956 469 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 SOX10P56693 466 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 IRF5Q13568 498 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 ZNF792Q3KQV3 632 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 ARHGEF16Q5VV41 709 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 XRRA1Q6P2D8 792 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 KRT25Q7Z3Z0 450 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 FCHSD1Q86WN1 690 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 FAM133AQ8N9E0 248 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 AIFM3Q96NN9 605 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 RMDN3Q96TC7 470 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 NAP1L4Q99733 375 aaKnown RBP10.56□□□□□ -0.72
LDLR-210ENST00000559340 APBA2Q99767 749 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 FOXP1Q9H334 677 aaPredicted RBP10.56□□□□□ -0.72
LDLR-210ENST00000559340 FOXD4L1Q9NU39 408 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 GJD2Q9UKL4 321 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 KCNJ14Q9UNX9 436 aa10.56□□□□□ -0.72
LDLR-210ENST00000559340 TRIM17Q9Y577 477 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms