RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 TMEM253P0C7T8 217 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 MED14OSP0DP75 135 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 PLS3P13797 630 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 GTF2F1P35269 517 aaKnown RBP eCLIP5.81□□□□□ -1.48
VPS13C-207ENST00000558919 CYP4F3Q08477 520 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 RBL2Q08999 1139 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 CBX2Q14781 532 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-207ENST00000558919 NR1I3Q14994 352 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 SF3A1Q15459 793 aaKnown RBP5.81□□□□□ -1.48
VPS13C-207ENST00000558919 IQCEQ6IPM2 695 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 CPNE8Q86YQ8 564 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 NPLOC4Q8TAT6 608 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 KCNN1Q92952 543 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 ZNF669Q96BR6 464 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-207ENST00000558919 GPRC5CQ9NQ84 441 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 CLEC1BQ9P126 229 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 KLHL14Q9P2G3 628 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 PPP1R1BQ9UD71 204 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-207ENST00000558919 MSRB2Q9Y3D2 182 aa5.81□□□□□ -1.48
VPS13C-207ENST00000558919 A0A1W2PQU0 124 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 IQCA1LA6NCM1 817 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 NPHS1O60500 1241 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 SNRPB2P08579 225 aaKnown RBP5.8□□□□□ -1.48
VPS13C-207ENST00000558919 SDHBP21912 280 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 RAP1GAPP47736 663 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 ZNF124Q15973 351 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 E4F1Q66K89 784 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-207ENST00000558919 TMEM132EQ6IEE7 984 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 FRS2Q8WU20 508 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 SIRPGQ9P1W8 387 aa5.8□□□□□ -1.48
VPS13C-207ENST00000558919 C7orf72A4D263 438 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 DBX1A6NMT0 343 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 ETV2O00321 342 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-207ENST00000558919 CYBBP04839 570 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 DBHP09172 617 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 C1QTNF9P0C862 333 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 VIPR1P32241 457 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 GFRA1P56159 465 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 PPP2R2AP63151 447 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 SRSF3P84103 164 aaKnown RBP5.79□□□□□ -1.48
VPS13C-207ENST00000558919 HSP90AA2PQ14568 343 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-207ENST00000558919 RAB3GAP1Q15042 981 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 TESK1Q15569 626 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 ACBD5Q5T8D3 534 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-207ENST00000558919 BICRALQ6AI39 1079 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 PAQR3Q6TCH7 311 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 CCDC113Q9H0I3 377 aa5.79□□□□□ -1.48
VPS13C-207ENST00000558919 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS13C-207ENST00000558919 NUDT19A8MXV4 375 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 GLI4P10075 376 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 MAPKAPK2P49137 400 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 DLG4P78352 724 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 SOGA3Q5TF21 947 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 RPTNQ6XPR3 784 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 NPM2Q86SE8 214 aaKnown RBP5.78□□□□□ -1.48
VPS13C-207ENST00000558919 CABP7Q86V35 215 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 ANKLE2Q86XL3 938 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 LZTR1Q8N653 840 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 KREMEN2Q8NCW0 462 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 MTA3Q9BTC8 594 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 GCM1Q9NP62 436 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 CD320Q9NPF0 282 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 SIRT5Q9NXA8 310 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 GULP1Q9UBP9 304 aa5.78□□□□□ -1.48
VPS13C-207ENST00000558919 MBD1Q9UIS9 605 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-207ENST00000558919 TCAF2A6NFQ2 919 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 PDPK1O15530 556 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 MEFVO15553 781 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-207ENST00000558919 PPP1R11O60927 126 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-207ENST00000558919 TACR1P25103 407 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 ECI1P42126 302 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 KCNJ6P48051 423 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 MAP4K2Q12851 820 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 KCNAB2Q13303 367 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 FZD5Q13467 585 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 RASGRF1Q13972 1273 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 SF1Q15637 639 aaKnown RBP5.77□□□□□ -1.49
VPS13C-207ENST00000558919 MBLAC2Q68D91 279 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 ZC3H14Q6PJT7 736 aaKnown RBP5.77□□□□□ -1.49
VPS13C-207ENST00000558919 ATG14Q6ZNE5 492 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 LRP10Q7Z4F1 713 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 LRRC47Q8N1G4 583 aaKnown RBP5.77□□□□□ -1.49
VPS13C-207ENST00000558919 NETO2Q8NC67 525 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 DIO2Q92813 273 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 C1orf159Q96HA4 380 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 AARSD1Q9BTE6 412 aaKnown RBP5.77□□□□□ -1.49
VPS13C-207ENST00000558919 RWDD3Q9Y3V2 267 aa5.77□□□□□ -1.49
VPS13C-207ENST00000558919 GRIA2P42262 883 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 GTF2A2P52657 109 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 SERINC3Q13530 473 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 INF2Q27J81 1249 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 PRSS53Q2L4Q9 553 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 PLEKHN1Q494U1 663 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-207ENST00000558919 SLC35F1Q5T1Q4 408 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 TMC6Q7Z403 805 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 TMEM145Q8NBT3 493 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 SREK1Q8WXA9 508 aaKnown RBP5.76□□□□□ -1.49
VPS13C-207ENST00000558919 KCTD13Q8WZ19 329 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 TOX2Q96NM4 488 aa5.76□□□□□ -1.49
VPS13C-207ENST00000558919 CNTD2Q9H8S5 307 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms