RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CPLX1O14810 134 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 TEX33O43247 280 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 LDHBP07195 334 aaKnown RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 LSP1P33241 339 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 SLMAPQ14BN4 828 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 AOC3Q16853 763 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 SPTY2D1Q68D10 685 aaPredicted RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 NAIF1Q69YI7 327 aaPredicted RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 OTUD7BQ6GQQ9 843 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 KIAA1328Q86T90 577 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 DZIP1Q86YF9 867 aaKnown RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 STRBPQ96SI9 672 aaKnown RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 DDX20Q9UHI6 824 aaKnown RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 SCN9AQ15858 1988 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 FAM205AQ6ZU69 1335 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 GOLGB1Q14789 3259 aaKnown RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 G3V3G9 751 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 ERVK-24P63145 666 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 GTF2IP78347 998 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 ADCY2Q08462 1091 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 HSP90AA4PQ58FG1 418 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 C6orf89Q6UWU4 347 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 ZNF473Q8WTR7 871 aaKnown RBP12.1□□□□□ -0.47
USP3-206ENST00000558157 PPP1R37O75864 691 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 CDKL5O76039 1030 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 FAM107AO95990 144 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 TBC1D8BQ0IIM8 1120 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 DALRD3Q5D0E6 543 aaKnown RBP12.1□□□□□ -0.47
USP3-206ENST00000558157 MFSD14BQ5SR56 506 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 CYB5D1Q6P9G0 228 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 ZNF579Q8NAF0 562 aaKnown RBP12.1□□□□□ -0.47
USP3-206ENST00000558157 SUPT20HQ8NEM7 779 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 RSRC1Q96IZ7 334 aaKnown RBP12.1□□□□□ -0.47
USP3-206ENST00000558157 HOMER3Q9NSC5 361 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 EPN1Q9Y6I3 576 aaPredicted RBP12.1□□□□□ -0.47
USP3-206ENST00000558157 MYH2Q9UKX2 1941 aa12.1□□□□□ -0.47
USP3-206ENST00000558157 MAGEB6P1A0A0J9YX57 407 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 LRRC10BA6NIK2 292 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 ECE2O60344 883 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 NDUFA10O95299 355 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 MYBL2P10244 700 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 FXR1P51114 621 aaKnown RBP eCLIP12.09□□□□□ -0.47
USP3-206ENST00000558157 DYNLL1P63167 89 aaKnown RBP12.09□□□□□ -0.47
USP3-206ENST00000558157 KRT83P78385 493 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 SPAG1Q07617 926 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 PDCLQ13371 301 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 AP1ARQ63HQ0 302 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 CCDC121Q6ZUS5 278 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 SND1Q7KZF4 910 aaKnown RBP eCLIP12.09□□□□□ -0.47
USP3-206ENST00000558157 RTKN2Q8IZC4 609 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 NLGN2Q8NFZ4 835 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 ZNF483Q8TF39 744 aaPredicted RBP12.09□□□□□ -0.47
USP3-206ENST00000558157 CPLX3Q8WVH0 158 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 JAKMIP2Q96AA8 810 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 MED15Q96RN5 788 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 SPON1Q9HCB6 807 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 FER1L6Q2WGJ9 1857 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 PPIP5K2O43314 1243 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 PTGISQ16647 500 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 RNF187Q5TA31 235 aaPredicted RBP12.09□□□□□ -0.47
USP3-206ENST00000558157 SAMD1Q6SPF0 538 aaPredicted RBP12.09□□□□□ -0.47
USP3-206ENST00000558157 CD302Q8IX05 232 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 TRMT44Q8IYL2 757 aaKnown RBP12.09□□□□□ -0.47
USP3-206ENST00000558157 FUKQ8N0W3 1084 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 CAGE1Q8TC20 777 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 CCDC114Q96M63 670 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 PSMD1Q99460 953 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 RIOK1Q9BRS2 568 aaKnown RBP12.09□□□□□ -0.47
USP3-206ENST00000558157 EPB41L4AQ9HCS5 686 aaPredicted RBP12.09□□□□□ -0.47
USP3-206ENST00000558157 SYNRGQ9UMZ2 1314 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 COL4A5P29400 1685 aa12.09□□□□□ -0.47
USP3-206ENST00000558157 GOLGA8BA8MQT2 603 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 PES1O00541 588 aaKnown RBP12.08□□□□□ -0.48
USP3-206ENST00000558157 PRKAB2O43741 272 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 KRT86O43790 486 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 FGAP02671 866 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 DIXDC1Q155Q3 683 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 TTMPQ5BVD1 217 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 ARMC9Q7Z3E5 817 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 CEP57Q86XR8 500 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 MXD3Q9BW11 206 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 KCNQ5Q9NR82 932 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 GUCA1BQ9UMX6 200 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 HPS5Q9UPZ3 1129 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 ADAMTSL1Q8N6G6 1762 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 PSME4Q14997 1843 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 ABL1P00519 1130 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 ATP1A1P05023 1023 aaKnown RBP12.08□□□□□ -0.48
USP3-206ENST00000558157 XRCC4Q13426 336 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 SOGA3Q5TF21 947 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 PPP4R3AQ6IN85 833 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 PODNQ7Z5L7 613 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 NLRP14Q86W24 1093 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 CERS5Q8N5B7 392 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 MYCBPAPQ8TBZ2 947 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 TCP11Q8WWU5 503 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 CCT8L2Q96SF2 557 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 SLF1Q9BQI6 1058 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 ZNF277Q9NRM2 450 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms