RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 USH1GQ495M9 461 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 FAM126BQ8IXS8 530 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 CLEC4DQ8WXI8 215 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 GUCD1Q96NT3 240 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 ZSCAN10Q96SZ4 725 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-235ENST00000557740 PPP1R12CQ9BZL4 782 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 KRT23Q9C075 422 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 CNNM2Q9H8M5 875 aa17.14■□□□□ 0.33
SHMT2-235ENST00000557740 SUPT16HQ9Y5B9 1047 aaKnown RBP17.14■□□□□ 0.33
SHMT2-235ENST00000557740 LAMA4Q16363 1823 aa17.13■□□□□ 0.33
SHMT2-235ENST00000557740 PTGS1P23219 599 aa17.13■□□□□ 0.33
SHMT2-235ENST00000557740 RPS6P62753 249 aaKnown RBP17.13■□□□□ 0.33
SHMT2-235ENST00000557740 DUSP28Q4G0W2 176 aa17.13■□□□□ 0.33
SHMT2-235ENST00000557740 MFSD5Q6N075 450 aa17.13■□□□□ 0.33
SHMT2-235ENST00000557740 UBAC1Q9BSL1 405 aa17.13■□□□□ 0.33
SHMT2-235ENST00000557740 UBA5Q9GZZ9 404 aa17.13■□□□□ 0.33
SHMT2-235ENST00000557740 B4DLN1 442 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 DHX16O60231 1041 aaKnown RBP17.12■□□□□ 0.33
SHMT2-235ENST00000557740 MRPL12P52815 198 aaKnown RBP17.12■□□□□ 0.33
SHMT2-235ENST00000557740 ITGA7Q13683 1181 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 CDC37Q16543 378 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-235ENST00000557740 ASPRV1Q53RT3 343 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 TTC22Q5TAA0 569 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 TMEM199Q8N511 208 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 ENAHQ8N8S7 591 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-235ENST00000557740 DNERQ8NFT8 737 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 SEZ6LQ9BYH1 1024 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 WDR11Q9BZH6 1224 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 CPVLQ9H3G5 476 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 TNKSO95271 1327 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 RAD50Q92878 1312 aa17.12■□□□□ 0.33
SHMT2-235ENST00000557740 PPP2R5BQ15173 497 aa17.11■□□□□ 0.33
SHMT2-235ENST00000557740 SLC43A3Q8NBI5 491 aa17.11■□□□□ 0.33
SHMT2-235ENST00000557740 ANKS1AQ92625 1134 aa17.11■□□□□ 0.33
SHMT2-235ENST00000557740 ZSWIM5Q9P217 1185 aa17.11■□□□□ 0.33
SHMT2-235ENST00000557740 LCTP09848 1927 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 CD4P01730 458 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 PARP1P09874 1014 aaKnown RBP17.1■□□□□ 0.33
SHMT2-235ENST00000557740 GSPT1P15170 499 aaKnown RBP17.1■□□□□ 0.33
SHMT2-235ENST00000557740 CSF2RAP15509 400 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 PDE4AP27815 886 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 CPT1AP50416 773 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 PSMC6P62333 389 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 BRDTQ58F21 947 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-235ENST00000557740 TMEM63BQ5T3F8 832 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 IFIT1BQ5T764 474 aaKnown RBP17.1■□□□□ 0.33
SHMT2-235ENST00000557740 PSRC1Q6PGN9 363 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-235ENST00000557740 ADGRF4Q8IZF3 695 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 OR6J1Q8NGC5 347 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 SCFD2Q8WU76 684 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.1■□□□□ 0.333e-9■□□□□ 10
SHMT2-235ENST00000557740 SEMA6BQ9H3T3 888 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 HIPK3Q9H422 1215 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 POLR3EQ9NVU0 708 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 ABCB11O95342 1321 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 COL6A3P12111 3177 aa17.1■□□□□ 0.33
SHMT2-235ENST00000557740 TMEM265A0A087WTH1 108 aa17.09■□□□□ 0.33
SHMT2-235ENST00000557740 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-235ENST00000557740 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-235ENST00000557740 RBM47A0AV96 593 aaKnown RBP17.09■□□□□ 0.33
SHMT2-235ENST00000557740 NKRFO15226 690 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHMT2-235ENST00000557740 MYL3P08590 195 aa17.09■□□□□ 0.33
SHMT2-235ENST00000557740 EDNRBP24530 442 aa17.09■□□□□ 0.33
SHMT2-235ENST00000557740 RGS22Q8NE09 1264 aa17.09■□□□□ 0.33
SHMT2-235ENST00000557740 RUFY2Q8WXA3 655 aa17.09■□□□□ 0.33
SHMT2-235ENST00000557740 CDX2Q99626 313 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-235ENST00000557740 IL25Q9H293 177 aa17.09■□□□□ 0.33
SHMT2-235ENST00000557740 GPHNQ9NQX3 736 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-235ENST00000557740 CYP2C18P33260 490 aa17.08■□□□□ 0.32
SHMT2-235ENST00000557740 TRDNQ13061 729 aa17.08■□□□□ 0.32
SHMT2-235ENST00000557740 QRICH1Q2TAL8 776 aa17.08■□□□□ 0.32
SHMT2-235ENST00000557740 MAF1Q9H063 256 aa17.08■□□□□ 0.32
SHMT2-235ENST00000557740 TTYH1Q9H313 450 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-235ENST00000557740 LAMA2P24043 3122 aaKnown RBP17.07■□□□□ 0.32
SHMT2-235ENST00000557740 GRIN2DO15399 1336 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 B4GALT4O60513 344 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 ACRP10323 421 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 DNAJB2P25686 324 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 IRX6P78412 446 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-235ENST00000557740 PURAQ00577 322 aaKnown RBP17.07■□□□□ 0.32
SHMT2-235ENST00000557740 TTLL4Q14679 1199 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 TMEM240Q5SV17 173 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 FBXO11Q86XK2 927 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 MCF2L2Q86YR7 1114 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 TRPV6Q9H1D0 765 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 ALDH8A1Q9H2A2 487 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-235ENST00000557740 MTIF3Q9H2K0 278 aaKnown RBP17.07■□□□□ 0.32
SHMT2-235ENST00000557740 VAT1LQ9HCJ6 419 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 IL23AQ9NPF7 189 aa17.07■□□□□ 0.32
SHMT2-235ENST00000557740 MRPL11Q9Y3B7 192 aaKnown RBP17.07■□□□□ 0.32
SHMT2-235ENST00000557740 DLL1O00548 723 aa17.06■□□□□ 0.32
SHMT2-235ENST00000557740 TXNP10599 105 aaKnown RBP17.06■□□□□ 0.32
SHMT2-235ENST00000557740 ZNF365Q70YC5 407 aa17.06■□□□□ 0.32
SHMT2-235ENST00000557740 C16orf59Q7L2K0 433 aa17.06■□□□□ 0.32
SHMT2-235ENST00000557740 SYTL5Q8TDW5 730 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-235ENST00000557740 NSUN6Q8TEA1 469 aaKnown RBP17.06■□□□□ 0.32
SHMT2-235ENST00000557740 MYLIPQ8WY64 445 aa17.06■□□□□ 0.32
SHMT2-235ENST00000557740 MTG1Q9BT17 334 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-235ENST00000557740 NOC4LQ9BVI4 516 aaKnown RBP17.06■□□□□ 0.32
SHMT2-235ENST00000557740 JMJD4Q9H9V9 463 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms