RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 STK24Q9Y6E0 443 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 H7C1D1 291 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 PPP1R11O60927 126 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-229ENST00000557348 AMPD3Q01432 767 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 DPYDQ12882 1025 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 RASA3Q14644 834 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 CALCRLQ16602 461 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 PDXDC2PQ6P474 469 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 APOBEC3FQ8IUX4 373 aaKnown RBP14.24□□□□□ -0.13
SHMT2-229ENST00000557348 MICALL2Q8IY33 904 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 LPAR1Q92633 364 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 CALML4Q96GE6 196 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 PGAP2Q9UHJ9 254 aa14.24□□□□□ -0.13
SHMT2-229ENST00000557348 ADAMTS3O15072 1205 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 PPP1R2P41236 205 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 GMPSP49915 693 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-229ENST00000557348 IL17AQ16552 155 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 NBPF9Q3BBW0 867 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 KRT222Q8N1A0 295 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 IGSF22Q8N9C0 903 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 CCDC112Q8NEF3 446 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 ZNF397Q8NF99 534 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-229ENST00000557348 ENOX1Q8TC92 643 aaKnown RBP14.23□□□□□ -0.13
SHMT2-229ENST00000557348 LRRC27Q9C0I9 530 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 TMEM60Q9H2L4 133 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 EHMT1Q9H9B1 1298 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 PRDM10Q9NQV6 1147 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 IMPACTQ9P2X3 320 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 FEM1BQ9UK73 627 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 PPP2R3BQ9Y5P8 575 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 A0A087X0B3 334 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-229ENST00000557348 AP5Z1O43299 807 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 CTNND1O60716 968 aaKnown RBP14.23□□□□□ -0.13
SHMT2-229ENST00000557348 GSDMDP57764 484 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 KIF4BQ2VIQ3 1234 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 CABP7Q86V35 215 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 MTMR9Q96QG7 549 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 FHDC1Q9C0D6 1143 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-229ENST00000557348 CALCOCO1Q9P1Z2 691 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 STK17AQ9UEE5 414 aa14.23□□□□□ -0.13
SHMT2-229ENST00000557348 CNOT7Q9UIV1 285 aaKnown RBP14.23□□□□□ -0.13
SHMT2-229ENST00000557348 CYP3A7-CYP3A51PA0A087WV96 503 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 A0A1W2PRG0 241 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 SPDYE3A6NKU9 549 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 PIK3CDO00329 1044 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 PRR29P0C7W0 189 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 CYP3A7P24462 503 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 AFMP43652 599 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 NCBP1Q09161 790 aaKnown RBP14.22□□□□□ -0.13
SHMT2-229ENST00000557348 RRP1BQ14684 758 aaKnown RBP14.22□□□□□ -0.13
SHMT2-229ENST00000557348 KCNB1Q14721 858 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 NCAPHQ15003 741 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 KCNF1Q9H3M0 494 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 TMEM260Q9NX78 707 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 FAM53CQ9NYF3 392 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 DDX25Q9UHL0 483 aaKnown RBP14.22□□□□□ -0.13
SHMT2-229ENST00000557348 PRR12Q9ULL5 1215 aa14.22□□□□□ -0.13
SHMT2-229ENST00000557348 TBX3O15119 743 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 FOXN1O15353 648 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 SLURP2P0DP57 97 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 SLFN12Q8IYM2 578 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 CDK5RAP3Q96JB5 506 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 ANO3Q9BYT9 981 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 LRWD1Q9UFC0 647 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 MRPL11Q9Y3B7 192 aaKnown RBP14.21□□□□□ -0.13
SHMT2-229ENST00000557348 KDM3AQ9Y4C1 1321 aa14.21□□□□□ -0.13
SHMT2-229ENST00000557348 WDR46O15213 610 aaKnown RBP14.2□□□□□ -0.14
SHMT2-229ENST00000557348 NRDCO43847 1150 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 MARCH6O60337 910 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 FDX1P10109 184 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 LMNB1P20700 586 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 KCNJ6P48051 423 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 USP14P54578 494 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 JAG1P78504 1218 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 RASSF7Q02833 373 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 KARSQ15046 597 aaKnown RBP14.2□□□□□ -0.14
SHMT2-229ENST00000557348 UBE2SQ16763 222 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 SHROOM1Q2M3G4 852 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-229ENST00000557348 KRT79Q5XKE5 535 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 ZNF771Q7L3S4 317 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-229ENST00000557348 POTEDQ86YR6 584 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 GPC2Q8N158 579 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 KCTD17Q8N5Z5 321 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 SAMD3Q8N6K7 520 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 MBOAT7Q96N66 472 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 KIAA1683Q9H0B3 1180 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 RANBP17Q9H2T7 1088 aaKnown RBP14.2□□□□□ -0.14
SHMT2-229ENST00000557348 KBTBD4Q9NVX7 518 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 RABGAP1Q9Y3P9 1069 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 GJA3Q9Y6H8 435 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 ABCB11O95342 1321 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 ECE1P42892 770 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 STIM1Q13586 685 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 ERO1AQ96HE7 468 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 TEPSINQ96N21 525 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 NUP88Q99567 741 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-229ENST00000557348 SYT17Q9BSW7 474 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 ZNF341Q9BYN7 854 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 NT5C3AQ9H0P0 336 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms