RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ALDH8A1Q9H2A2 487 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-228ENST00000557302 FAM217BQ9NTX9 383 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-228ENST00000557302 ADD3Q9UEY8 706 aaKnown RBP15.72■□□□□ 0.11
SHMT2-228ENST00000557302 NRBP1Q9UHY1 535 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 NID2Q14112 1375 aa15.72■□□□□ 0.11
SHMT2-228ENST00000557302 CNTNAP5Q8WYK1 1306 aa15.71■□□□□ 0.11
SHMT2-228ENST00000557302 BRCA2P51587 3418 aa15.71■□□□□ 0.11
SHMT2-228ENST00000557302 SOWAHBA6NEL2 793 aa15.71■□□□□ 0.11
SHMT2-228ENST00000557302 ASB14A6NK59 587 aa15.71■□□□□ 0.11
SHMT2-228ENST00000557302 CNGA1P29973 690 aa15.71■□□□□ 0.11
SHMT2-228ENST00000557302 PDIA3P30101 505 aaKnown RBP15.71■□□□□ 0.11
SHMT2-228ENST00000557302 CCND3P30281 292 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-228ENST00000557302 ADD1P35611 737 aaKnown RBP15.71■□□□□ 0.11
SHMT2-228ENST00000557302 ARMCX2Q7L311 632 aa15.71■□□□□ 0.11
SHMT2-228ENST00000557302 U2AF1L4Q8WU68 220 aaKnown RBP15.71■□□□□ 0.11
SHMT2-228ENST00000557302 ZNF274Q96GC6 653 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-228ENST00000557302 CNPY2Q9Y2B0 182 aa15.71■□□□□ 0.11
SHMT2-228ENST00000557302 hCG_1642624A0A1W2PR95 340 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 GJA8P48165 433 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 NEK4P51957 841 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 FUT2Q10981 343 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 ANKRD1Q15327 319 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 PRAMEF19Q5SWL8 479 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 TRPV1Q8NER1 839 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 TBC1D5Q92609 795 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 PURBQ96QR8 312 aaKnown RBP15.7■□□□□ 0.1
SHMT2-228ENST00000557302 LARP6Q9BRS8 491 aaKnown RBP15.7■□□□□ 0.1
SHMT2-228ENST00000557302 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-228ENST00000557302 MYH6P13533 1939 aa15.7■□□□□ 0.1
SHMT2-228ENST00000557302 PLXNA1Q9UIW2 1896 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 LOC102724159A0A0B4J2E5 919 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 OPLAHO14841 1288 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 SGPL1O95470 568 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 SNAI1O95863 264 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 CFBP00751 764 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 EN2P19622 333 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 RBM25P49756 843 aaKnown RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 ALDH5A1P51649 535 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 AK2P54819 239 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 CCT2P78371 535 aaKnown RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 PWP2Q15269 919 aaKnown RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 SAMD3Q8N6K7 520 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 DNERQ8NFT8 737 aa15.69■□□□□ 0.1
SHMT2-228ENST00000557302 SYTL5Q8TDW5 730 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 MPHOSPH6Q99547 160 aaKnown RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 NCOA5Q9HCD5 579 aaKnown RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 V9GY48 417 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-228ENST00000557302 ASTN1O14525 1302 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 GCOM1H8Y6P7 765 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-228ENST00000557302 SEPT4O43236 478 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 MSCO60682 206 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 TFRCP02786 760 aaKnown RBP15.68■□□□□ 0.1
SHMT2-228ENST00000557302 POLR2MP0CAP2 368 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 CAPN2P17655 700 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 HSD17B4P51659 736 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 GHRHRQ02643 423 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 STK3Q13188 491 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 HEATR3Q7Z4Q2 680 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 CRISPLD2Q9H0B8 497 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 ABHD16BQ9H3Z7 469 aa15.68■□□□□ 0.1
SHMT2-228ENST00000557302 MAP3K20Q9NYL2 800 aaKnown RBP15.68■□□□□ 0.1
SHMT2-228ENST00000557302 DDX20Q9UHI6 824 aaKnown RBP15.68■□□□□ 0.1
SHMT2-228ENST00000557302 ZHX1Q9UKY1 873 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-228ENST00000557302 RBBP6Q7Z6E9 1792 aaKnown RBP15.67■□□□□ 0.1
SHMT2-228ENST00000557302 B4DLN1 442 aa15.67■□□□□ 0.1
SHMT2-228ENST00000557302 CPLX1O14810 134 aa15.67■□□□□ 0.1
SHMT2-228ENST00000557302 ZNF865P0CJ78 1059 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-228ENST00000557302 MRPL12P52815 198 aaKnown RBP15.67■□□□□ 0.1
SHMT2-228ENST00000557302 AKAP17AQ02040 695 aaKnown RBP15.67■□□□□ 0.1
SHMT2-228ENST00000557302 ACVR2BQ13705 512 aa15.67■□□□□ 0.1
SHMT2-228ENST00000557302 NSUN6Q8TEA1 469 aaKnown RBP15.67■□□□□ 0.1
SHMT2-228ENST00000557302 GPKOWQ92917 476 aaPredicted RBP eCLIP15.67■□□□□ 0.1
SHMT2-228ENST00000557302 SHISA4Q96DD7 197 aa15.67■□□□□ 0.1
SHMT2-228ENST00000557302 COL20A1Q9P218 1284 aa15.67■□□□□ 0.1
SHMT2-228ENST00000557302 RBM27Q9P2N5 1060 aaKnown RBP15.67■□□□□ 0.1
SHMT2-228ENST00000557302 TPCN1Q9ULQ1 816 aa15.67■□□□□ 0.1
SHMT2-228ENST00000557302 hCG_1984214I3L0E3 225 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 AKR1A1P14550 325 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 IFNAR1P17181 557 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 HOXA13P31271 388 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-228ENST00000557302 PDE4DQ08499 809 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 NTRK3Q16288 839 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 LHX8Q68G74 356 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 WWC2Q6AWC2 1192 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 CPLX2Q6PUV4 134 aaKnown RBP15.66■□□□□ 0.1
SHMT2-228ENST00000557302 NOL8Q76FK4 1167 aaKnown RBP15.66■□□□□ 0.1
SHMT2-228ENST00000557302 ZNF713Q8N859 430 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-228ENST00000557302 MORC4Q8TE76 937 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 CUL5Q93034 780 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 TAAR1Q96RJ0 339 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 RMDN3Q96TC7 470 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 KIF2CQ99661 725 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 BACH2Q9BYV9 841 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 SLKQ9H2G2 1235 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-228ENST00000557302 OGDHLQ9ULD0 1010 aa15.66■□□□□ 0.1
SHMT2-228ENST00000557302 DDX49Q9Y6V7 483 aaKnown RBP15.66■□□□□ 0.1
SHMT2-228ENST00000557302 PRPF3O43395 683 aaKnown RBP15.65■□□□□ 0.1
SHMT2-228ENST00000557302 PFKFB2O60825 505 aa15.65■□□□□ 0.1
SHMT2-228ENST00000557302 EDNRBP24530 442 aa15.65■□□□□ 0.1
SHMT2-228ENST00000557302 NAPAP54920 295 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms