RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	SF3B3	Q15393	1217 aa	Known RBP	6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	NFKBIB	Q15653	356 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	SLC9C1	Q4G0N8	1177 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	MCM10	Q7L590	875 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	VSIG10L	Q86VR7	867 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	TBC1D16	Q8TBP0	767 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	CD99L2	Q8TCZ2	262 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	PNISR	Q8TF01	805 aa	Known RBP	6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	FBXL18	Q96ME1	805 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	PODXL2	Q9NZ53	605 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	STXBP5L	Q9Y2K9	1186 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	NR2E3	Q9Y5X4	410 aa		6.22	□□□□□ -1.41
SCFD1-223	ENST00000557076	WTIP	A6NIX2	430 aa	Predicted RBP	6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	IGF2BP3	O00425	579 aa	Known RBP eCLIP	6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	MYL6B	P14649	208 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	RPS8	P62241	208 aa	Known RBP	6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	GSTM4	Q03013	218 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	SOX4	Q06945	474 aa	Predicted RBP	6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	MAP3K11	Q16584	847 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	NBPF9	Q3BBW0	867 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	UBE2Q1	Q7Z7E8	422 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	ABI1	Q8IZP0	508 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	FBLIM1	Q8WUP2	373 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	EZH1	Q92800	747 aa	Predicted RBP	6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	MIS18A	Q9NYP9	233 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	CCDC39	Q9UFE4	941 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	FOXD3	Q9UJU5	478 aa	Predicted RBP	6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	SH3TC1	Q8TE82	1336 aa		6.21	□□□□□ -1.42
SCFD1-223	ENST00000557076	WNT10B	O00744	389 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	DLGAP3	O95886	979 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	EIF4A1	P60842	406 aa	Known RBP	6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	CAP1	Q01518	475 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	CRHR2	Q13324	411 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	HSP90AB3P	Q58FF7	597 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	PEAR1	Q5VY43	1037 aa	Predicted RBP	6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	CDPF1	Q6NVV7	123 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	LRP10	Q7Z4F1	713 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	NLRP10	Q86W26	655 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	C2CD4A	Q8NCU7	369 aa	Predicted RBP	6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	TBC1D32	Q96NH3	1257 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	PTPN18	Q99952	460 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	HTATIP2	Q9BUP3	242 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	ZFYVE1	Q9HBF4	777 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	TRMT112	Q9UI30	125 aa	Known RBP	6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	SCAF8	Q9UPN6	1271 aa	Known RBP	6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	PRUNE2	Q8WUY3	3088 aa		6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	LAMA2	P24043	3122 aa	Known RBP	6.2	□□□□□ -1.42
SCFD1-223	ENST00000557076	TTC28	Q96AY4	2481 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	ZNF609	O15014	1411 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	CYP26A1	O43174	497 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	CYP11A1	P05108	521 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	DRD2	P14416	443 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	CAPN2	P17655	700 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	PRKAR2B	P31323	418 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	MTMR3	Q13615	1198 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	DCTN1	Q14203	1278 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	ERICH6	Q7L0X2	663 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	ZAR1	Q86SH2	424 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	CELF1	Q92879	486 aa	Known RBP	6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	ZFYVE28	Q9HCC9	887 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	PRKAG2	Q9UGJ0	569 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	PTCH2	Q9Y6C5	1203 aa		6.19	□□□□□ -1.42
SCFD1-223	ENST00000557076	PAPPA2	Q9BXP8	1791 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	KRTAP4-8	A0A0G2JLE6	195 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	ADH5	P11766	374 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	BMP8B	P34820	402 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	GJA8	P48165	433 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	PRMT2	P55345	433 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	PRKG1	Q13976	671 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	MAP7	Q14244	749 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	GJD3	Q8N144	294 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	DEFB123	Q8N688	67 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	WNK4	Q96J92	1243 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	NRSN2	Q9GZP1	204 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	DEFB129	Q9H1M3	183 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	CLEC4M	Q9H2X3	399 aa	Predicted RBP	6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	LATS2	Q9NRM7	1088 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	BSDC1	Q9NW68	430 aa	Predicted RBP	6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	MTMR10	Q9NXD2	777 aa		6.18	□□□□□ -1.42
SCFD1-223	ENST00000557076	FZD6	O60353	706 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	UFL1	O94874	794 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	GJB1	P08034	283 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	CYP27A1	Q02318	531 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	PCDH1	Q08174	1060 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	LRIT3	Q3SXY7	679 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	SUPT20HL1	Q3ZLR7	823 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	DUSP27	Q5VZP5	1158 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	CBLL1	Q75N03	491 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	COPS6	Q7L5N1	327 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	APOBEC3F	Q8IUX4	373 aa	Known RBP	6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	TP53INP2	Q8IXH6	220 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	AGBL5	Q8NDL9	886 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	SH3TC2	Q8TF17	1288 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	SHISA4	Q96DD7	197 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	ZBED3	Q96IU2	234 aa	Predicted RBP	6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	STAP2	Q9UGK3	403 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076	NUDC	Q9Y266	331 aa		6.17	□□□□□ -1.42
SCFD1-223	ENST00000557076		A0A096LPE4	126 aa		6.16	□□□□□ -1.42
SCFD1-223	ENST00000557076	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	6.16	□□□□□ -1.42

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