RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PRKAR2AP13861 404 aaKnown RBP20.2■□□□□ 0.82
SHMT2-225ENST00000556798 UBXN2AP68543 259 aa20.2■□□□□ 0.82
SHMT2-225ENST00000556798 OLFML2BQ68BL8 750 aa20.2■□□□□ 0.82
SHMT2-225ENST00000556798 WWC2Q6AWC2 1192 aa20.2■□□□□ 0.82
SHMT2-225ENST00000556798 NECAB1Q8N987 351 aa20.2■□□□□ 0.82
SHMT2-225ENST00000556798 DIS3Q9Y2L1 958 aaKnown RBP20.2■□□□□ 0.82
SHMT2-225ENST00000556798 DDX49Q9Y6V7 483 aaKnown RBP20.2■□□□□ 0.82
SHMT2-225ENST00000556798 KIAA0100Q14667 2235 aaKnown RBP20.2■□□□□ 0.82
SHMT2-225ENST00000556798 CCDC85CA6NKD9 419 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 CPLX1O14810 134 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 IGHA2P01877 340 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 CACNB2Q08289 660 aaPredicted RBP20.19■□□□□ 0.82
SHMT2-225ENST00000556798 TRAF1Q13077 416 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 MFSD14CQ5VZR4 134 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 MCF2L2Q86YR7 1114 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 TINF2Q9BSI4 451 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 SLC26A6Q9BXS9 759 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 UNC93B1Q9H1C4 597 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 COL20A1Q9P218 1284 aa20.19■□□□□ 0.82
SHMT2-225ENST00000556798 BRCA2P51587 3418 aa20.18■□□□□ 0.82
SHMT2-225ENST00000556798 CCL5P13501 91 aa20.18■□□□□ 0.82
SHMT2-225ENST00000556798 IFNAR1P17181 557 aa20.18■□□□□ 0.82
SHMT2-225ENST00000556798 HOXA13P31271 388 aaPredicted RBP20.18■□□□□ 0.82
SHMT2-225ENST00000556798 RGS22Q8NE09 1264 aa20.18■□□□□ 0.82
SHMT2-225ENST00000556798 PRPF3O43395 683 aaKnown RBP20.17■□□□□ 0.82
SHMT2-225ENST00000556798 PFKFB3Q16875 520 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-225ENST00000556798 PRAMEF19Q5SWL8 479 aa20.17■□□□□ 0.82
SHMT2-225ENST00000556798 MAP3K21Q5TCX8 1036 aa20.17■□□□□ 0.82
SHMT2-225ENST00000556798 TYW1BQ6NUM6 668 aa20.17■□□□□ 0.82
SHMT2-225ENST00000556798 ZNF467Q7Z7K2 595 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-225ENST00000556798 SYTL5Q8TDW5 730 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-225ENST00000556798 GTF3C6Q969F1 213 aa20.17■□□□□ 0.82
SHMT2-225ENST00000556798 RNF26Q9BY78 433 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-225ENST00000556798 LIMCH1Q9UPQ0 1083 aa20.17■□□□□ 0.82
SHMT2-225ENST00000556798 KIAA1217Q5T5P2 1943 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 CD2BP2O95400 341 aaKnown RBP20.16■□□□□ 0.82
SHMT2-225ENST00000556798 SCG2P13521 617 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 CCND3P30281 292 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-225ENST00000556798 ALDH5A1P51649 535 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-225ENST00000556798 HSD17B4P51659 736 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 NAPAP54920 295 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 AKAP17AQ02040 695 aaKnown RBP20.16■□□□□ 0.82
SHMT2-225ENST00000556798 ST3GAL1Q11201 340 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 PKN1Q16512 942 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 CPLX2Q6PUV4 134 aaKnown RBP20.16■□□□□ 0.82
SHMT2-225ENST00000556798 MAMDC4Q6UXC1 1216 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 ARMCX2Q7L311 632 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 TRPV1Q8NER1 839 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 RNF208Q9H0X6 261 aa20.16■□□□□ 0.82
SHMT2-225ENST00000556798 GCOM1H8Y6P7 765 aaPredicted RBP20.15■□□□□ 0.82
SHMT2-225ENST00000556798 STXBP3O00186 592 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 ST18O60284 1047 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 POLR2MP0CAP2 368 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 CYBAP13498 195 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 GHRHRQ02643 423 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 SSRP1Q08945 709 aaKnown RBP20.15■□□□□ 0.82
SHMT2-225ENST00000556798 TRIM22Q8IYM9 498 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 TAAR1Q96RJ0 339 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.15■□□□□ 0.824e-7■■■□□ 14.7
SHMT2-225ENST00000556798 HMX1Q9NP08 348 aaPredicted RBP20.15■□□□□ 0.82
SHMT2-225ENST00000556798 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.15■□□□□ 0.82
SHMT2-225ENST00000556798 RBM27Q9P2N5 1060 aaKnown RBP20.15■□□□□ 0.82
SHMT2-225ENST00000556798 ADD3Q9UEY8 706 aaKnown RBP20.15■□□□□ 0.82
SHMT2-225ENST00000556798 RPTORQ8N122 1335 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 SYNGAP1Q96PV0 1343 aa20.15■□□□□ 0.82
SHMT2-225ENST00000556798 CTDNEP1O95476 244 aa20.14■□□□□ 0.81
SHMT2-225ENST00000556798 SNAI1O95863 264 aaPredicted RBP20.14■□□□□ 0.81
SHMT2-225ENST00000556798 SOX10P56693 466 aa20.14■□□□□ 0.81
SHMT2-225ENST00000556798 USP17L6PQ6QN14 398 aa20.14■□□□□ 0.81
SHMT2-225ENST00000556798 FCHSD1Q86WN1 690 aa20.14■□□□□ 0.81
SHMT2-225ENST00000556798 MSL3Q8N5Y2 521 aaKnown RBP20.14■□□□□ 0.81
SHMT2-225ENST00000556798 BARHL2Q9NY43 387 aa20.14■□□□□ 0.81
SHMT2-225ENST00000556798 ASB14A6NK59 587 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 hCG_1984214I3L0E3 225 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 CAPN15O75808 1086 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 CDKL5O76039 1030 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 CNGA1P29973 690 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 UBE2SQ16763 222 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 PPP1R18Q6NYC8 613 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 ZNF713Q8N859 430 aaPredicted RBP20.13■□□□□ 0.81
SHMT2-225ENST00000556798 RMDN3Q96TC7 470 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 MAF1Q9H063 256 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 PSTPIP2Q9H939 334 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 ZHX1Q9UKY1 873 aaPredicted RBP20.13■□□□□ 0.81
SHMT2-225ENST00000556798 CNPY2Q9Y2B0 182 aa20.13■□□□□ 0.81
SHMT2-225ENST00000556798 POTEFA5A3E0 1075 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 MEIS2O14770 477 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 EIF2AK2P19525 551 aaKnown RBP20.12■□□□□ 0.81
SHMT2-225ENST00000556798 EEPD1Q7L9B9 569 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 CCDC83Q8IWF9 413 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 DNERQ8NFT8 737 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 SMARCC2Q8TAQ2 1214 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 CUL5Q93034 780 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 SHISA4Q96DD7 197 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 AIFM3Q96NN9 605 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 DEFB118Q96PH6 123 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 TMEM106CQ9BVX2 250 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 PAK6Q9NQU5 681 aaPredicted RBP20.12■□□□□ 0.81
SHMT2-225ENST00000556798 VPS54Q9P1Q0 977 aa20.12■□□□□ 0.81
SHMT2-225ENST00000556798 STK36Q9NRP7 1315 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms