RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SLKQ9H2G2 1235 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 CNPY2Q9Y2B0 182 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 ASB14A6NK59 587 aa13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 PPFIA3O75145 1194 aa13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 CPLX2Q6PUV4 134 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 ARMCX2Q7L311 632 aa13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 ZNF467Q7Z7K2 595 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 RGS22Q8NE09 1264 aa13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 GPKOWQ92917 476 aaPredicted RBP eCLIP13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 PHKBQ93100 1093 aa13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 MPHOSPH6Q99547 160 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 SLC26A6Q9BXS9 759 aa13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 ZHX1Q9UKY1 873 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 TPCN1Q9ULQ1 816 aa13.22□□□□□ -0.29
CCDC88C-212ENST00000556767 POTEFA5A3E0 1075 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 GCOM1H8Y6P7 765 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 GJB1P08034 283 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 POLR2MP0CAP2 368 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 HOXA13P31271 388 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 ALDH5A1P51649 535 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 FUT2Q10981 343 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 MAP3K21Q5TCX8 1036 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 MSL3Q8N5Y2 521 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 SYTL5Q8TDW5 730 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 CUL5Q93034 780 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 FGD4Q96M96 766 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 KIF2CQ99661 725 aa13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 DDX49Q9Y6V7 483 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-212ENST00000556767 NID2Q14112 1375 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 SYNGAP1Q96PV0 1343 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 B4DLN1 442 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 OPLAHO14841 1288 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 PRPF3O43395 683 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 SNAI1O95863 264 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 TFRCP02786 760 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 CYBAP13498 195 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 MRPL12P52815 198 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 NAPAP54920 295 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 PDE4DQ08499 809 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 RABEP1Q15276 862 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 ARHGEF16Q5VV41 709 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 WWC2Q6AWC2 1192 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 MAMDC4Q6UXC1 1216 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 EEPD1Q7L9B9 569 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 FCHSD1Q86WN1 690 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 TRIM22Q8IYM9 498 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 TRPV1Q8NER1 839 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 SMARCC2Q8TAQ2 1214 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 U2AF1L4Q8WU68 220 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 TAAR1Q96RJ0 339 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 RMDN3Q96TC7 470 aa13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 RBM27Q9P2N5 1060 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 RBBP6Q7Z6E9 1792 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-212ENST00000556767 PFKFB2O60825 505 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 CDKL5O76039 1030 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 SGPL1O95470 568 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 IGHA2P01877 340 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 MYCNP04198 464 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 SCG2P13521 617 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 IFNAR1P17181 557 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 EN2P19622 333 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 SSRP1Q08945 709 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 SCRN1Q12765 414 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 NTRK3Q16288 839 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 ME3Q16798 604 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 ANO1Q5XXA6 986 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 NECAB1Q8N987 351 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 DNERQ8NFT8 737 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 NSUN6Q8TEA1 469 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 TBC1D32Q96NH3 1257 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 RNF26Q9BY78 433 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 MAF1Q9H063 256 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 ABHD16BQ9H3Z7 469 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 PSTPIP2Q9H939 334 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 PAK6Q9NQU5 681 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 MAP3K20Q9NYL2 800 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 COL20A1Q9P218 1284 aa13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 DDX20Q9UHI6 824 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-212ENST00000556767 ASTN1O14525 1302 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 MCM3APO60318 1980 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 hCG_1984214I3L0E3 225 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 SEPT4O43236 478 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 ST18O60284 1047 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 EIF2AK2P19525 551 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 GJA8P48165 433 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 HSD17B4P51659 736 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 ACVR2BQ13705 512 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 PFKFB3Q16875 520 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 USP17L6PQ6QN14 398 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 SAMD3Q8N6K7 520 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 ZNF713Q8N859 430 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 NRBP1Q9UHY1 535 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 LIMCH1Q9UPQ0 1083 aa13.18□□□□□ -0.3
CCDC88C-212ENST00000556767 LCTP09848 1927 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 SMCO2A6NFE2 343 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 STXBP3O00186 592 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 MSCO60682 206 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 LARGE1O95461 756 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 ZNF865P0CJ78 1059 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms