RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 IRF2BP1Q8IU81 584 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 KRTAP1-3Q8IUG1 177 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 SIRT2Q8IXJ6 389 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 DNAJC7Q99615 494 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 SLC6A17Q9H1V8 727 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 PIF1Q9H611 641 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 TNFRSF12AQ9NP84 129 aa7.03□□□□□ -1.28
SCFD1-221ENST00000556534 PABPC1P11940 636 aaKnown RBP7.02□□□□□ -1.29
SCFD1-221ENST00000556534 KCNAB2Q13303 367 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 NFE2L2Q16236 605 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 INF2Q27J81 1249 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 FOXB2Q5VYV0 432 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 DPH6Q7L8W6 267 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 PPIL6Q8IXY8 311 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 JMYQ8N9B5 988 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 KCTD13Q8WZ19 329 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 ZSWIM4Q9H7M6 989 aa7.02□□□□□ -1.29
SCFD1-221ENST00000556534 KDM2BQ8NHM5 1336 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 C7orf72A4D263 438 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 MEFVO15553 781 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-221ENST00000556534 PRODHO43272 600 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 FAM153BP0C7A2 387 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 ERVFRD-1P60508 538 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 MPZL3Q6UWV2 235 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 PRR23BQ6ZRT6 265 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 ZBTB38Q8NAP3 1195 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-221ENST00000556534 NLGN2Q8NFZ4 835 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 USP35Q9P2H5 1018 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 FBLN5Q9UBX5 448 aa7.01□□□□□ -1.29
SCFD1-221ENST00000556534 PAX4O43316 350 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 LTBRP36941 435 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 CYP4F8P98187 520 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 NTRK3Q16288 839 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 ADGRF1Q5T601 910 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 NSMFQ6X4W1 530 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 DIO2Q92813 273 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 EXOC2Q96KP1 924 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 FMNL2Q96PY5 1086 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 MTA3Q9BTC8 594 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 PDLIM7Q9NR12 457 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 GULP1Q9UBP9 304 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 RNF114Q9Y508 228 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 NPFFR2Q9Y5X5 522 aa7□□□□□ -1.29
SCFD1-221ENST00000556534 LRRC10BA6NIK2 292 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 NPHS1O60500 1241 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 PPP1R11O60927 126 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-221ENST00000556534 SDHBP21912 280 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 TACR1P25103 407 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 MLANAQ16655 118 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 LONRF2Q1L5Z9 754 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 C2orf27AQ580R0 203 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 IQCEQ6IPM2 695 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 LILRB2Q8N423 598 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 DPF3Q92784 378 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 MRFAP1L1Q96HT8 127 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 NSUN3Q9H649 340 aaKnown RBP6.99□□□□□ -1.29
SCFD1-221ENST00000556534 FAM53CQ9NYF3 392 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 FBXL7Q9UJT9 491 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 RWDD3Q9Y3V2 267 aa6.99□□□□□ -1.29
SCFD1-221ENST00000556534 SRGAP3O43295 1099 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 LCP1P13796 627 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 ARL4AP40617 200 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 FAM209AQ5JX71 171 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 NLRP10Q86W26 655 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 Q8N1Y9 231 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 RCBTB1Q8NDN9 531 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 DIRC2Q96SL1 478 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 EPB41L4BQ9H329 900 aa6.98□□□□□ -1.29
SCFD1-221ENST00000556534 TRBV23-1A0A0A0MS06 115 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 A0A1W2PQ27 194 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 A0A1W2PQ64 194 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 A0A1W2PQC6 194 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 A0A1W2PQD8 194 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 OR14I1A6ND48 311 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 DBHP09172 617 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 PDE6BP35913 854 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 OGFOD2Q6N063 350 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 USP53Q70EK8 1073 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 LZTR1Q8N653 840 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 THAP3Q8WTV1 239 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-221ENST00000556534 PTCH2Q9Y6C5 1203 aa6.97□□□□□ -1.29
SCFD1-221ENST00000556534 BLACEA4D250 179 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 HRKO00198 91 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 C6orf222P0C671 652 aaPredicted RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 GLI4P10075 376 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 RPL11P62913 178 aaKnown RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 SUMO1P63165 101 aaKnown RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 YBX1P67809 324 aaKnown RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 RBM10P98175 930 aaKnown RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 MESP2Q0VG99 397 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 BICRALQ6AI39 1079 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 PLEKHO2Q8TD55 490 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 KISS1RQ969F8 398 aaPredicted RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 CDC6Q99741 560 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 PHF20Q9BVI0 1012 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 ZNF552Q9H707 407 aaPredicted RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 KCNK12Q9HB15 430 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 GPR27Q9NS67 375 aa6.96□□□□□ -1.3
SCFD1-221ENST00000556534 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.96□□□□□ -1.37e-7■■□□□ 12.3
SCFD1-221ENST00000556534 MARCH2Q9P0N8 246 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms