RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 LAMA2P24043 3122 aaKnown RBP9.45□□□□□ -0.9
VTI1B-206ENST00000556461 BAZ2BQ9UIF8 2168 aaKnown RBP9.44□□□□□ -0.9
VTI1B-206ENST00000556461 A0A1W2PQ45 241 aaPredicted RBP9.44□□□□□ -0.9
VTI1B-206ENST00000556461 A0A1W2PQY0 241 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 ERICH2A1L162 156 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 RXRAP19793 462 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 EDNRBP24530 442 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 MCM5P33992 734 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 GJA9P57773 515 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 BEX3Q00994 111 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 TNFAIP2Q03169 654 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 SART3Q15020 963 aaKnown RBP9.44□□□□□ -0.9
VTI1B-206ENST00000556461 SNX17Q15036 470 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 KCNA10Q16322 511 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 CASC1Q6TDU7 716 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 CATIPQ7Z7H3 387 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 RNF180Q86T96 592 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 HOMER1Q86YM7 354 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 RGS22Q8NE09 1264 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 SYTL5Q8TDW5 730 aaPredicted RBP9.44□□□□□ -0.9
VTI1B-206ENST00000556461 PIBF1Q8WXW3 757 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 TAAR1Q96RJ0 339 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 PIGSQ96S52 555 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 UPF3AQ9H1J1 476 aaKnown RBP9.44□□□□□ -0.9
VTI1B-206ENST00000556461 PPP4R2Q9NY27 417 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 GNEQ9Y223 722 aaKnown RBP9.44□□□□□ -0.9
VTI1B-206ENST00000556461 ATP11BQ9Y2G3 1177 aa9.44□□□□□ -0.9
VTI1B-206ENST00000556461 ZBTB5O15062 677 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 DYNC1LI2O43237 492 aaPredicted RBP9.43□□□□□ -0.9
VTI1B-206ENST00000556461 PLEKHA8P1O95397 391 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 C6orf222P0C671 652 aaPredicted RBP9.43□□□□□ -0.9
VTI1B-206ENST00000556461 CPA1P15085 419 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 MAGEA10P43363 369 aaPredicted RBP9.43□□□□□ -0.9
VTI1B-206ENST00000556461 ACLYP53396 1101 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 EXOSC10Q01780 885 aaKnown RBP9.43□□□□□ -0.9
VTI1B-206ENST00000556461 SH3RF1Q7Z6J0 888 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 CMTR1Q8N1G2 835 aaKnown RBP9.43□□□□□ -0.9
VTI1B-206ENST00000556461 GDF15Q99988 308 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 VTA1Q9NP79 307 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 ADD3Q9UEY8 706 aaKnown RBP9.43□□□□□ -0.9
VTI1B-206ENST00000556461 PNMA2Q9UL42 364 aa9.43□□□□□ -0.9
VTI1B-206ENST00000556461 MRPL11Q9Y3B7 192 aaKnown RBP9.43□□□□□ -0.9
VTI1B-206ENST00000556461 RBM47A0AV96 593 aaKnown RBP9.42□□□□□ -0.9
VTI1B-206ENST00000556461 DDAH1O94760 285 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 ARIH2O95376 493 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 ASGR1P07306 291 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 CST5P28325 142 aaPredicted RBP9.42□□□□□ -0.9
VTI1B-206ENST00000556461 LIFRP42702 1097 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 FXR1P51114 621 aaKnown RBP eCLIP9.42□□□□□ -0.9
VTI1B-206ENST00000556461 NKX3-2P78367 333 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 MDM2Q00987 491 aaPredicted RBP9.42□□□□□ -0.9
VTI1B-206ENST00000556461 TLE2Q04725 743 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 TSGA10IPQ3SY00 556 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 NFXL1Q6ZNB6 911 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 NOL8Q76FK4 1167 aaKnown RBP9.42□□□□□ -0.9
VTI1B-206ENST00000556461 TLK2Q86UE8 772 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 SRBD1Q8N5C6 995 aaKnown RBP9.42□□□□□ -0.9
VTI1B-206ENST00000556461 COPS5Q92905 334 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 KCNB2Q92953 911 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 TMEM87BQ96K49 555 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 NEK1Q96PY6 1258 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 TSEN34Q9BSV6 310 aaKnown RBP9.42□□□□□ -0.9
VTI1B-206ENST00000556461 MTA3Q9BTC8 594 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 AMNQ9BXJ7 453 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 PCDHA1Q9Y5I3 950 aa9.42□□□□□ -0.9
VTI1B-206ENST00000556461 PNMA6FA0A0J9YX94 578 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 hCG_1642624A0A1W2PR95 340 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 TRIM43BA6NCK2 446 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 CCDC69A6NI79 296 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 PQBP1O60828 265 aaKnown RBP9.41□□□□□ -0.9
VTI1B-206ENST00000556461 CFBP00751 764 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 EIF2AK2P19525 551 aaKnown RBP9.41□□□□□ -0.9
VTI1B-206ENST00000556461 ITGB8P26012 769 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 HOXA13P31271 388 aaPredicted RBP9.41□□□□□ -0.9
VTI1B-206ENST00000556461 HSD17B4P51659 736 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 GHRHRQ02643 423 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 PDE4DQ08499 809 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 FSCN1Q16658 493 aaKnown RBP9.41□□□□□ -0.9
VTI1B-206ENST00000556461 GNASQ5JWF2 1037 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 RNF20Q5VTR2 975 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 C1orf53Q5VUE5 145 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 IQSEC1Q6DN90 963 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 CXCL17Q6UXB2 119 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 DHX32Q7L7V1 743 aaKnown RBP9.41□□□□□ -0.9
VTI1B-206ENST00000556461 MCF2L2Q86YR7 1114 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 DNERQ8NFT8 737 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 TRIM43Q96BQ3 446 aaPredicted RBP9.41□□□□□ -0.9
VTI1B-206ENST00000556461 RMDN3Q96TC7 470 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 MAP3K14Q99558 947 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 WDR11Q9BZH6 1224 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 STARD7Q9NQZ5 370 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 PDLIM7Q9NR12 457 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 BRPF3Q9ULD4 1205 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 SNX14Q9Y5W7 946 aa9.41□□□□□ -0.9
VTI1B-206ENST00000556461 GRIN2DO15399 1336 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 LOC102724159A0A0B4J2E5 919 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 MOXD2PA6NHM9 499 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 CENPBP07199 599 aaPredicted RBP9.4□□□□□ -0.9
VTI1B-206ENST00000556461 HSPA4P34932 840 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 PWP2Q15269 919 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms