RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 MED23Q9ULK4 1368 aa6.21□□□□□ -1.41
ATXN3-239ENST00000556315 NUP98P52948 1817 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 DHX15O43143 795 aaKnown RBP6.21□□□□□ -1.42
ATXN3-239ENST00000556315 MYO1BO43795 1136 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 CCT4P50991 539 aaKnown RBP6.21□□□□□ -1.42
ATXN3-239ENST00000556315 PRMT2P55345 433 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 CAP1Q01518 475 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 KRT24Q2M2I5 525 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 ACAD11Q709F0 780 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 KRTAP19-1Q8IUB9 90 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 ZDHHC13Q8IUH4 622 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 GJD3Q8N144 294 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 DMRTB1Q96MA1 342 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 ASB16Q96NS5 453 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 POP1Q99575 1024 aaKnown RBP6.21□□□□□ -1.42
ATXN3-239ENST00000556315 ELP3Q9H9T3 547 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 CWC25Q9NXE8 425 aaPredicted RBP6.21□□□□□ -1.42
ATXN3-239ENST00000556315 NR2E3Q9Y5X4 410 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 AKAP11Q9UKA4 1901 aa6.21□□□□□ -1.42
ATXN3-239ENST00000556315 A0A1W2PPC1 479 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 COBLO75128 1261 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 PTPRAP18433 802 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 EPHA1P21709 976 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 TMPOP42166 694 aaKnown RBP6.2□□□□□ -1.42
ATXN3-239ENST00000556315 GTF2A2P52657 109 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 KIF22Q14807 665 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 TAF1CQ15572 869 aaPredicted RBP6.2□□□□□ -1.42
ATXN3-239ENST00000556315 C8orf34Q49A92 452 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 NBPF12Q5TAG4 269 aaPredicted RBP6.2□□□□□ -1.42
ATXN3-239ENST00000556315 XKR5Q6UX68 686 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 FOXD4L4Q8WXT5 416 aaPredicted RBP6.2□□□□□ -1.42
ATXN3-239ENST00000556315 JARID2Q92833 1246 aaPredicted RBP6.2□□□□□ -1.42
ATXN3-239ENST00000556315 FAM129BQ96TA1 746 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 MYD88Q99836 296 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 HTATIP2Q9BUP3 242 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 ANKRD2Q9GZV1 360 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 PRO3102Q9H379 93 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 SH2B1Q9NRF2 756 aaPredicted RBP6.2□□□□□ -1.42
ATXN3-239ENST00000556315 TMEM63CQ9P1W3 806 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 SALL4Q9UJQ4 1053 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 LAS1LQ9Y4W2 734 aaKnown RBP6.2□□□□□ -1.42
ATXN3-239ENST00000556315 ZNF804BA4D1E1 1349 aa6.2□□□□□ -1.42
ATXN3-239ENST00000556315 CCL15-CCL14A0A0B4J2E2 113 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 ADAM11O75078 769 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 TGFB1P01137 390 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 NEFLP07196 543 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 IGHMBP2P38935 993 aaKnown RBP6.19□□□□□ -1.42
ATXN3-239ENST00000556315 NFIAQ12857 509 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 RASA3Q14644 834 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 CCL15Q16663 113 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 DUOXA2Q1HG44 320 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 DUSP27Q5VZP5 1158 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 FAM117BQ6P1L5 589 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 ZNF438Q7Z4V0 828 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 NCAPG2Q86XI2 1143 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 TTLL11Q8NHH1 800 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 SH3TC2Q8TF17 1288 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 BRI3BPQ8WY22 251 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 WNT8BQ93098 351 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 OPTNQ96CV9 577 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 KLHDC7BQ96G42 594 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 PRMT6Q96LA8 375 aaPredicted RBP6.19□□□□□ -1.42
ATXN3-239ENST00000556315 MYRFLQ96LU7 910 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 METTL22Q9BUU2 404 aaPredicted RBP6.19□□□□□ -1.42
ATXN3-239ENST00000556315 C7orf69Q9H7B7 122 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 CD209Q9NNX6 404 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 CNTN3Q9P232 1028 aa6.19□□□□□ -1.42
ATXN3-239ENST00000556315 COL1A1P02452 1464 aaPredicted RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 CLRN2A0PK11 232 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 DDX3YO15523 660 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 TLR2O60603 784 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 DDX58O95786 925 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 GJB1P08034 283 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 CAPN2P17655 700 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 HOXD10P28358 340 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 CDC25BP30305 580 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 KCNJ4P48050 445 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 CTSWP56202 376 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 FKBP1AP62942 108 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 LACTBP83111 547 aaPredicted RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 TNFAIP1Q13829 316 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 CFAP100Q494V2 611 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 RNF43Q68DV7 783 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 TMC7Q7Z402 723 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 TRIM42Q8IWZ5 723 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 FAM43AQ8N2R8 423 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 UTP4Q969X6 686 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 ALKBH8Q96BT7 664 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 CHMP4AQ9BY43 222 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 GREM2Q9H772 168 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 PHAXQ9H814 394 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 VEZTQ9HBM0 779 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 GOLGA2P5Q9HBQ8 144 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 ZCCHC17Q9NP64 241 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 OSGEPQ9NPF4 335 aa6.18□□□□□ -1.42
ATXN3-239ENST00000556315 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 POLR2AP24928 1970 aaKnown RBP6.18□□□□□ -1.42
ATXN3-239ENST00000556315 LAMB4A4D0S4 1761 aa6.17□□□□□ -1.42
ATXN3-239ENST00000556315 ANKRD36CQ5JPF3 1778 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms