RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 TNKSO95271 1327 aa10.78□□□□□ -0.68
SYNE2-209ENST00000553308 TANC1Q9C0D5 1861 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 PLA2G6O60733 806 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 ARHGEF15O94989 841 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 PURAQ00577 322 aaKnown RBP10.77□□□□□ -0.69
SYNE2-209ENST00000553308 DUSP28Q4G0W2 176 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 TMEM67Q5HYA8 995 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 KRT40Q6A162 431 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 RCSD1Q6JBY9 416 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 NACAP1Q9BZK3 213 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 INCENPQ9NQS7 918 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 IL17RBQ9NRM6 502 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 STX8Q9UNK0 236 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.77□□□□□ -0.69
SYNE2-209ENST00000553308 MTCH2Q9Y6C9 303 aa10.77□□□□□ -0.69
SYNE2-209ENST00000553308 CHD7Q9P2D1 2997 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 TSPY2A6NKD2 308 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 NFIBO00712 420 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 ERC2O15083 957 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 FOXP2O15409 715 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 ICAM1P05362 532 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 SLC3A2P08195 630 aaKnown RBP10.76□□□□□ -0.69
SYNE2-209ENST00000553308 PFKMP08237 780 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 MYL3P08590 195 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 SUPT20HL2P0C7V6 817 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 ALDH5A1P51649 535 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-209ENST00000553308 CTDSPL2Q05D32 466 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 BAATQ14032 418 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-209ENST00000553308 AAK1Q2M2I8 961 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 CCDC96Q2M329 555 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 FAM47CQ5HY64 1035 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 MIER1Q8N108 512 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 OR6J1Q8NGC5 347 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 FAM122AQ96E09 287 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 WDR11Q9BZH6 1224 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 POLR3EQ9NVU0 708 aa10.76□□□□□ -0.69
SYNE2-209ENST00000553308 COL4A4P53420 1690 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-209ENST00000553308 GTPBP6O43824 516 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-209ENST00000553308 POU3F3P20264 500 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-209ENST00000553308 SLC16A2P36021 539 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 CPT1AP50416 773 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 TAP1Q03518 808 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 NBPF20Q3BBV1 942 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 ZMYM1Q5SVZ6 1142 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 TTBK2Q6IQ55 1244 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 SLC30A10Q6XR72 485 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 SPRED2Q7Z698 418 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 ARNTL2Q8WYA1 636 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 SLC9A7Q96T83 725 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 MTG1Q9BT17 334 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-209ENST00000553308 FSD1Q9BTV5 496 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 C1QTNF1Q9BXJ1 281 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 RANBP17Q9H2T7 1088 aaKnown RBP10.75□□□□□ -0.69
SYNE2-209ENST00000553308 ADD3Q9UEY8 706 aaKnown RBP10.75□□□□□ -0.69
SYNE2-209ENST00000553308 SCN10AQ9Y5Y9 1956 aa10.75□□□□□ -0.69
SYNE2-209ENST00000553308 PRRC2BQ5JSZ5 2229 aaKnown RBP10.74□□□□□ -0.69
SYNE2-209ENST00000553308 RBM47A0AV96 593 aaKnown RBP10.74□□□□□ -0.69
SYNE2-209ENST00000553308 PTPDC1A2A3K4 754 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 IQCF3P0C7M6 154 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 ACTN1P12814 892 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 LRRFIP1Q32MZ4 808 aaKnown RBP10.74□□□□□ -0.69
SYNE2-209ENST00000553308 PPP4R3BQ5MIZ7 849 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 HERC6Q8IVU3 1022 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 PI4K2BQ8TCG2 481 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 OTUD7AQ8TE49 926 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-209ENST00000553308 DCAF4Q8WV16 495 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 COPS5Q92905 334 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 EPHX3Q9H6B9 360 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 DCTPP1Q9H773 170 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 GPHNQ9NQX3 736 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-209ENST00000553308 RCAN3Q9UKA8 241 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 FRMPD2Q68DX3 1309 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-209ENST00000553308 PTPRSQ13332 1948 aa10.74□□□□□ -0.69
SYNE2-209ENST00000553308 RBAK-RBAKDNI3L0D1 243 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 PITPNM1O00562 1244 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 RANBP6O60518 1105 aaKnown RBP10.73□□□□□ -0.69
SYNE2-209ENST00000553308 CALML3P27482 149 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 RFC2P35250 354 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 NOVP48745 357 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 PPP2R5BQ15173 497 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 SYDE2Q5VT97 1194 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 BTNL9Q6UXG8 535 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 CLEC4DQ8WXI8 215 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 FTOQ9C0B1 505 aaKnown RBP eCLIP10.73□□□□□ -0.69
SYNE2-209ENST00000553308 GPCPD1Q9NPB8 672 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 TTC41PQ6P2S7 1318 aa10.73□□□□□ -0.69
SYNE2-209ENST00000553308 REV3LO60673 3130 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 LOC102724159A0A0B4J2E5 919 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 LCHNA4D1U4 455 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 TLL1O43897 1013 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 LPXNO60711 386 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 CHMP4BP1P59074 171 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 PDE4DQ08499 809 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 GRB10Q13322 594 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 PWP2Q15269 919 aaKnown RBP10.72□□□□□ -0.69
SYNE2-209ENST00000553308 VPS53Q5VIR6 699 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 NFRKBQ6P4R8 1299 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 TMCO2Q7Z6W1 182 aaPredicted RBP10.72□□□□□ -0.69
SYNE2-209ENST00000553308 RETREG2Q8NC44 543 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 PHOSPHO2Q8TCD6 241 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms