RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 NEFLP07196 543 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 TOP1P11387 765 aaKnown RBP13.97□□□□□ -0.17
CKAP4-202ENST00000552828 NUCB1Q02818 461 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 BAATQ14032 418 aaPredicted RBP13.97□□□□□ -0.17
CKAP4-202ENST00000552828 NSMFQ6X4W1 530 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 KIAA1211Q6ZU35 1233 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 EEPD1Q7L9B9 569 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 CHD1LQ86WJ1 897 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 EVI5LQ96CN4 794 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 PURBQ96QR8 312 aaKnown RBP13.97□□□□□ -0.17
CKAP4-202ENST00000552828 GAS2L1Q99501 681 aaPredicted RBP13.97□□□□□ -0.17
CKAP4-202ENST00000552828 LNPKQ9C0E8 428 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 WNT8AQ9H1J5 351 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 ALDH8A1Q9H2A2 487 aaPredicted RBP13.97□□□□□ -0.17
CKAP4-202ENST00000552828 PRDM12Q9H4Q4 367 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 ADD3Q9UEY8 706 aaKnown RBP13.97□□□□□ -0.17
CKAP4-202ENST00000552828 BDP1A6H8Y1 2624 aa13.97□□□□□ -0.17
CKAP4-202ENST00000552828 FGAP02671 866 aa13.96□□□□□ -0.17
CKAP4-202ENST00000552828 PSMC6P62333 389 aa13.96□□□□□ -0.17
CKAP4-202ENST00000552828 ADGRE1Q14246 886 aa13.96□□□□□ -0.17
CKAP4-202ENST00000552828 SYDE2Q5VT97 1194 aa13.96□□□□□ -0.17
CKAP4-202ENST00000552828 TTBK2Q6IQ55 1244 aa13.96□□□□□ -0.17
CKAP4-202ENST00000552828 RPUSD2Q8IZ73 545 aaKnown RBP13.96□□□□□ -0.17
CKAP4-202ENST00000552828 ATXN2LQ8WWM7 1075 aaKnown RBP13.96□□□□□ -0.17
CKAP4-202ENST00000552828 TMEM47Q9BQJ4 181 aa13.96□□□□□ -0.17
CKAP4-202ENST00000552828 PNMA2Q9UL42 364 aa13.96□□□□□ -0.17
CKAP4-202ENST00000552828 LRRC37A2A6NM11 1700 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 ZMYM6O95789 1325 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 NFIBO00712 420 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 SLC16A2P36021 539 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 ALDH5A1P51649 535 aaPredicted RBP13.95□□□□□ -0.18
CKAP4-202ENST00000552828 CCL23P55773 120 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 PURAQ00577 322 aaKnown RBP13.95□□□□□ -0.18
CKAP4-202ENST00000552828 CCDC96Q2M329 555 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 OTOP2Q7RTS6 562 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 CLEC4DQ8WXI8 215 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 WDR11Q9BZH6 1224 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 POLR3EQ9NVU0 708 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 YBX2Q9Y2T7 364 aaKnown RBP13.95□□□□□ -0.18
CKAP4-202ENST00000552828 TRANK1O15050 2925 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 XIRP2A4UGR9 3374 aa13.95□□□□□ -0.18
CKAP4-202ENST00000552828 PFKMP08237 780 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 SUPT20HL2P0C7V6 817 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 SNHG28P0DPA3 235 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 EDNRBP24530 442 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 CPT1AP50416 773 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 PDE1AP54750 535 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 MCMDC2Q4G0Z9 681 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 TTC14Q96N46 770 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 NKX2-4Q9H2Z4 354 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 SLC28A3Q9HAS3 691 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 MTMR7Q9Y216 660 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 SLC4A7Q9Y6M7 1214 aa13.94□□□□□ -0.18
CKAP4-202ENST00000552828 WDR19Q8NEZ3 1342 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 A6NJR5 290 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 TNFRSF10AO00220 468 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 HSPD1P10809 573 aaKnown RBP13.93□□□□□ -0.18
CKAP4-202ENST00000552828 PDHBP11177 359 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 PCP11498 1178 aaKnown RBP13.93□□□□□ -0.18
CKAP4-202ENST00000552828 RGS22Q8NE09 1264 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 DNERQ8NFT8 737 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 FAM227BQ96M60 508 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 ASB2Q96Q27 587 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 MTG1Q9BT17 334 aaPredicted RBP13.93□□□□□ -0.18
CKAP4-202ENST00000552828 MAF1Q9H063 256 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 GPCPD1Q9NPB8 672 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 TRMT13Q9NUP7 481 aaKnown RBP13.93□□□□□ -0.18
CKAP4-202ENST00000552828 PCDHA11Q9Y5I1 949 aa13.93□□□□□ -0.18
CKAP4-202ENST00000552828 TNKSO95271 1327 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 A0A0D9SFI3 127 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 PTPDC1A2A3K4 754 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 NKRFO15226 690 aaKnown RBP eCLIP13.92□□□□□ -0.18
CKAP4-202ENST00000552828 KPNA6O60684 536 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 RPS6P62753 249 aaKnown RBP13.92□□□□□ -0.18
CKAP4-202ENST00000552828 ZNF543Q08ER8 600 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 NFRKBQ6P4R8 1299 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 SLC30A10Q6XR72 485 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 RNF207Q6ZRF8 634 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 SCLYQ96I15 445 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 THEGQ9P2T0 379 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 LCTP09848 1927 aa13.92□□□□□ -0.18
CKAP4-202ENST00000552828 FRMPD2Q68DX3 1309 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 PITPNM1O00562 1244 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 CYP2C9P11712 490 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 ATP2A2P16615 1042 aaKnown RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 RFC2P35250 354 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 RABGGTBP53611 331 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 MRPS5P82675 430 aaKnown RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 PTPN11Q06124 597 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 TTLL4Q14679 1199 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 NBPF20Q3BBV1 942 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 BRDTQ58F21 947 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 RRP12Q5JTH9 1297 aaKnown RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 ZNF589Q86UQ0 364 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 PLEKHM2Q8IWE5 1019 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 OR6J1Q8NGC5 347 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 SCFD2Q8WU76 684 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 PPM1EQ8WY54 764 aa13.91□□□□□ -0.18
CKAP4-202ENST00000552828 MPHOSPH6Q99547 160 aaKnown RBP13.91□□□□□ -0.18
CKAP4-202ENST00000552828 TOMM22Q9NS69 142 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms