RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 SV2AQ7L0J3 742 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 CCNJLQ8IV13 435 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 MB21D2Q8IYB1 491 aaPredicted RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 FMR1NBQ8N0W7 255 aaPredicted RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 SLC43A3Q8NBI5 491 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 C3orf58Q8NDZ4 430 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 FBXO18Q8NFZ0 1043 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 UBXN4Q92575 508 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 OSBP2Q969R2 916 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 SDF4Q9BRK5 362 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 CARD10Q9BWT7 1032 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 ACBD3Q9H3P7 528 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 ABCB6Q9NP58 842 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 ORC3Q9UBD5 711 aaPredicted RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 PPP1R1BQ9UD71 204 aaPredicted RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 INPP5FQ9Y2H2 1132 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 PCDHGB7Q9Y5F8 929 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 WDR17Q8IZU2 1322 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 PARP4Q9UKK3 1724 aaKnown RBP6.9□□□□□ -1.31
CHMP4A-210ENST00000552620 LOC102724428A0A0B4J2F2 783 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CPLX1O14810 134 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 SPTLC2O15270 562 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 PRC1O43663 620 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 GHRHP01286 108 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 FGAP02671 866 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 A1BGP04217 495 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 SLC3A2P08195 630 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 KCNJ6P48051 423 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 PIP4K2AP48426 406 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 SIK1P57059 783 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 NLRP12P59046 1061 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 LRMPQ12912 555 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 TRDNQ13061 729 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 IFIT5Q13325 482 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 UBE3CQ15386 1083 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 ALX1Q15699 326 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CHRNA2Q15822 529 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CCDC85BQ15834 202 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 HSP90AB3PQ58FF7 597 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 TAF7LQ5H9L4 462 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 UTP14CQ5TAP6 766 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 COL13A1Q5TAT6 717 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 ANO1Q5XXA6 986 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CEP135Q66GS9 1140 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 C11orf57Q6ZUT1 292 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 RALYLQ86SE5 291 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 DHX40Q8IX18 779 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 ELOA2Q8IYF1 753 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CEP120Q8N960 986 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 ZBTB38Q8NAP3 1195 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CCDC150Q8NCX0 1101 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CCDC112Q8NEF3 446 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 TRPM4Q8TD43 1214 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 TCF12Q99081 682 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 GTPBP4Q9BZE4 634 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 TANGO6Q9C0B7 1094 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 UBE2OQ9C0C9 1292 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 OSBPL5Q9H0X9 879 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 GOLPH3LQ9H4A5 285 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 NCOA5Q9HCD5 579 aaKnown RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 DZANK1Q9NVP4 752 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 NRBP1Q9UHY1 535 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 HCN2Q9UL51 889 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 NAP1L2Q9ULW6 460 aaPredicted RBP6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 CDHR2Q9BYE9 1310 aa6.89□□□□□ -1.31
CHMP4A-210ENST00000552620 LAMA4Q16363 1823 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 TNS2Q63HR2 1409 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 KLF18A0A0U1RQI7 1052 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 FAM237AA0A1B0GTK4 181 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 IKBKBO14920 756 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 CCP110O43303 1012 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 PPFIA3O75145 1194 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 PPP6R2O75170 966 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 STARD3NLO95772 234 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 CHGBP05060 677 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 UQCRFS1P1P0C7P4 283 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 BMP4P12644 408 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 SKILP12757 684 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 IL2RBP14784 551 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 PTPN14Q15678 1187 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 CCDC144BQ3MJ40 725 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 KIF6Q6ZMV9 814 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 ERMP1Q7Z2K6 904 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 VPS37DQ86XT2 251 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 RELL1Q8IUW5 271 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 NPAS3Q8IXF0 933 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 CCDC144CPQ8IYA2 1237 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 JMYQ8N9B5 988 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 SLC16A10Q8TF71 515 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 TMEM87BQ96K49 555 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 CNTNAP3BQ96NU0 1288 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 NOL10Q9BSC4 688 aaKnown RBP6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 CNTNAP3Q9BZ76 1288 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 PUS3Q9BZE2 481 aaKnown RBP6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 CEP44Q9C0F1 390 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 BHLHE41Q9C0J9 482 aaPredicted RBP6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 IGFLR1Q9H665 355 aa6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 SRA1Q9HD15 236 aaKnown RBP6.88□□□□□ -1.31
CHMP4A-210ENST00000552620 OGFRQ9NZT2 677 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms