RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MKRN3Q13064 507 aaKnown RBP10.98□□□□□ -0.65
LIMA1-211ENST00000552338 TAF1CQ15572 869 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-211ENST00000552338 SNRNP48Q6IEG0 339 aaKnown RBP10.98□□□□□ -0.65
LIMA1-211ENST00000552338 CCDC174Q6PII3 467 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 NOSTRINQ8IVI9 506 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 CPXCR1Q8N123 301 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 GPRC5AQ8NFJ5 357 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 TRERF1Q96PN7 1200 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 MOV10L1Q9BXT6 1211 aaKnown RBP10.98□□□□□ -0.65
LIMA1-211ENST00000552338 ACAD9Q9H845 621 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 ISY1Q9ULR0 285 aaKnown RBP10.98□□□□□ -0.65
LIMA1-211ENST00000552338 CTDP1Q9Y5B0 961 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-211ENST00000552338 ATP6V1DQ9Y5K8 247 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 PLXNA1Q9UIW2 1896 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 DNAJC25-GNG10A0A024R161 153 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 KIF28PB7ZC32 967 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 GCOM1H8Y6P7 765 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-211ENST00000552338 ADAMTS3O15072 1205 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 EDIL3O43854 480 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 CYP3A4P08684 503 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 POLR2MP0CAP2 368 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 ORC2Q13416 577 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-211ENST00000552338 RILPL1Q5EBL4 403 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 MUM1L1Q5H9M0 696 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 MOXD1Q6UVY6 613 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 KRT25Q7Z3Z0 450 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 REXO1Q8N1G1 1221 aaKnown RBP10.97□□□□□ -0.65
LIMA1-211ENST00000552338 OXER1Q8TDS5 423 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 SMCR8Q8TEV9 937 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-211ENST00000552338 PIBF1Q8WXW3 757 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 RNF146Q9NTX7 359 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 SAGE1Q9NXZ1 904 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 PFASO15067 1338 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 RPTORQ8N122 1335 aa10.97□□□□□ -0.65
LIMA1-211ENST00000552338 VPS37CA5D8V6 355 aaPredicted RBP10.96□□□□□ -0.65
LIMA1-211ENST00000552338 NFIBO00712 420 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 AOC2O75106 756 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 ALAS1P13196 640 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 ERCC3P19447 782 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 MAPK4P31152 587 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 CIITAP33076 1130 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 USP11P51784 963 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 GUCY1B3Q02153 619 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 NR5A1Q13285 461 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 USH1GQ495M9 461 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 EARS2Q5JPH6 523 aaKnown RBP10.96□□□□□ -0.65
LIMA1-211ENST00000552338 MYSM1Q5VVJ2 828 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 DNERQ8NFT8 737 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 TBC1D5Q92609 795 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 MBOAT7Q96N66 472 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 A1CFQ9NQ94 594 aaKnown RBP10.96□□□□□ -0.65
LIMA1-211ENST00000552338 CYP39A1Q9NYL5 469 aa10.96□□□□□ -0.65
LIMA1-211ENST00000552338 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.96□□□□□ -0.65
LIMA1-211ENST00000552338 DIS3Q9Y2L1 958 aaKnown RBP10.96□□□□□ -0.65
LIMA1-211ENST00000552338 CASP8AP2Q9UKL3 1982 aa10.96□□□□□ -0.66
LIMA1-211ENST00000552338 KIAA1217Q5T5P2 1943 aa10.96□□□□□ -0.66
LIMA1-211ENST00000552338 CYP3A7-CYP3A51PA0A087WV96 503 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 CYP3A7P24462 503 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 SREBF1P36956 1147 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 TOB1P50616 345 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-211ENST00000552338 RPS6P62753 249 aaKnown RBP10.95□□□□□ -0.66
LIMA1-211ENST00000552338 CRHR2Q13324 411 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 NONOQ15233 471 aaKnown RBP eCLIP10.95□□□□□ -0.66
LIMA1-211ENST00000552338 PPP4R3AQ6IN85 833 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 XRRA1Q6P2D8 792 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 USP17L6PQ6QN14 398 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 RNF207Q6ZRF8 634 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 ANKRD13CQ8N6S4 541 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 DNAJC5GQ8N7S2 189 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 FAM133AQ8N9E0 248 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 SYTL5Q8TDW5 730 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-211ENST00000552338 MORC4Q8TE76 937 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.95□□□□□ -0.66
LIMA1-211ENST00000552338 POLR3EQ9NVU0 708 aa10.95□□□□□ -0.66
LIMA1-211ENST00000552338 CFBP00751 764 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 IGHA2P01877 340 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 ATXN8OSP0DMR3 200 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 NASPP49321 788 aaPredicted RBP10.94□□□□□ -0.66
LIMA1-211ENST00000552338 IRF5Q13568 498 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 ZNF467Q7Z7K2 595 aaPredicted RBP10.94□□□□□ -0.66
LIMA1-211ENST00000552338 USP6NLQ92738 828 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 TNPO1Q92973 898 aaKnown RBP10.94□□□□□ -0.66
LIMA1-211ENST00000552338 IWS1Q96ST2 819 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 NAP1L4Q99733 375 aaKnown RBP10.94□□□□□ -0.66
LIMA1-211ENST00000552338 PAGR1Q9BTK6 254 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 ANO3Q9BYT9 981 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 PORCNQ9H237 461 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 RNF186Q9NXI6 227 aa10.94□□□□□ -0.66
LIMA1-211ENST00000552338 BIN2Q9UBW5 565 aaPredicted RBP10.94□□□□□ -0.66
LIMA1-211ENST00000552338 LRRC37A2A6NM11 1700 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 CCDC194A0A1B0GVG4 234 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 SLC15A5A6NIM6 579 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 SPDYE3A6NKU9 549 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 STAM2O75886 525 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 BMP15O95972 392 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 HOXC6P09630 235 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 FCER1AP12319 257 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 GCFC2P16383 781 aaKnown RBP10.93□□□□□ -0.66
LIMA1-211ENST00000552338 PTPREP23469 700 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 EDNRBP24530 442 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms