RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ME3Q16798 604 aa18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 SLC30A10Q6XR72 485 aa18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 HEATR3Q7Z4Q2 680 aa18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 GPKOWQ92917 476 aaPredicted RBP eCLIP18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 PHKBQ93100 1093 aa18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 ZNF333Q96JL9 665 aa18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 SLC26A6Q9BXS9 759 aa18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 MAF1Q9H063 256 aa18.73■□□□□ 0.59
CHMP1A-209ENST00000550872 PLXNA1Q9UIW2 1896 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 SOWAHBA6NEL2 793 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 OPLAHO14841 1288 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 ST18O60284 1047 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 LARGE1O95461 756 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 SSRP1Q08945 709 aaKnown RBP18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 NECAB1Q8N987 351 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 IL27Q8NEV9 243 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 PURBQ96QR8 312 aaKnown RBP18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 TINF2Q9BSI4 451 aa18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 RNF26Q9BY78 433 aaPredicted RBP18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 RBM27Q9P2N5 1060 aaKnown RBP18.72■□□□□ 0.59
CHMP1A-209ENST00000550872 CACNB2Q08289 660 aaPredicted RBP18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 WWC2Q6AWC2 1192 aa18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 ZNF467Q7Z7K2 595 aaPredicted RBP18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 TRIM22Q8IYM9 498 aa18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 SAMD3Q8N6K7 520 aa18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 SYTL5Q8TDW5 730 aaPredicted RBP18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 ZSCAN31Q96LW9 406 aaPredicted RBP18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 FGD4Q96M96 766 aa18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 ADD3Q9UEY8 706 aaKnown RBP18.71■□□□□ 0.59
CHMP1A-209ENST00000550872 GCOM1H8Y6P7 765 aaPredicted RBP18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 hCG_1984214I3L0E3 225 aa18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 CDKL5O76039 1030 aa18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 IGHA2P01877 340 aa18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 POLR2MP0CAP2 368 aa18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 SCG2P13521 617 aa18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 PRKAR2AP13861 404 aaKnown RBP18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 NAPAP54920 295 aa18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 MTFR1Q15390 333 aa18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 PFKFB3Q16875 520 aaPredicted RBP18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 MSL3Q8N5Y2 521 aaKnown RBP18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 ZNF713Q8N859 430 aaPredicted RBP18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 MAP3K20Q9NYL2 800 aaKnown RBP18.7■□□□□ 0.58
CHMP1A-209ENST00000550872 ASB14A6NK59 587 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 CCL5P13501 91 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 HOXA13P31271 388 aaPredicted RBP18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 HSD17B4P51659 736 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 PKN1Q16512 942 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 MAMDC4Q6UXC1 1216 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 CUL5Q93034 780 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 GTF3C6Q969F1 213 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 TAAR1Q96RJ0 339 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 TMEM106CQ9BVX2 250 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 RNF208Q9H0X6 261 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 UNC93B1Q9H1C4 597 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 PSTPIP2Q9H939 334 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 HMX1Q9NP08 348 aaPredicted RBP18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 BARHL2Q9NY43 387 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 RPTORQ8N122 1335 aa18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 KIAA0100Q14667 2235 aaKnown RBP18.69■□□□□ 0.58
CHMP1A-209ENST00000550872 ALDH5A1P51649 535 aaPredicted RBP18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 GHRHRQ02643 423 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 PRAMEF19Q5SWL8 479 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 MAP3K21Q5TCX8 1036 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 ARMCX2Q7L311 632 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 DNERQ8NFT8 737 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 SMARCC2Q8TAQ2 1214 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 COL20A1Q9P218 1284 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 CNPY2Q9Y2B0 182 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 ASTN1O14525 1302 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 SYNGAP1Q96PV0 1343 aa18.68■□□□□ 0.58
CHMP1A-209ENST00000550872 HTTP42858 3142 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 STXBP3O00186 592 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 DTNBO60941 627 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 DEXIO95424 95 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 CTDNEP1O95476 244 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 SNAI1O95863 264 aaPredicted RBP18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 CNGA1P29973 690 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 CCND3P30281 292 aaPredicted RBP18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 TYW1BQ6NUM6 668 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 PPP1R18Q6NYC8 613 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 USP17L6PQ6QN14 398 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 FCHSD1Q86WN1 690 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 CCDC83Q8IWF9 413 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 NSUN6Q8TEA1 469 aaKnown RBP18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 RMDN3Q96TC7 470 aa18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 MPHOSPH6Q99547 160 aaKnown RBP18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.67■□□□□ 0.582e-7■■■■□ 21.5
CHMP1A-209ENST00000550872 SH2B1Q9NRF2 756 aaPredicted RBP18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 DDX49Q9Y6V7 483 aaKnown RBP18.67■□□□□ 0.58
CHMP1A-209ENST00000550872 MCM3APO60318 1980 aa18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 SMCO2A6NFE2 343 aa18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 B4DLN1 442 aa18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 CYBAP13498 195 aa18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 MCM2P49736 904 aa18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 MRPL12P52815 198 aaKnown RBP18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 PRPF38BQ5VTL8 546 aaKnown RBP18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 ARHGEF16Q5VV41 709 aa18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 TRPV1Q8NER1 839 aa18.66■□□□□ 0.58
CHMP1A-209ENST00000550872 CCDC12Q8WUD4 166 aaPredicted RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms