RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 CDC25AP30304 524 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 SCNN1DP51172 638 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 KLHL30Q0D2K2 578 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 ORC2Q13416 577 aaPredicted RBP6.4□□□□□ -1.39
VPS50-220ENST00000544910 ITPK1Q13572 414 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 CFAP221Q4G0U5 840 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 USP17L2Q6R6M4 530 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 FAM196AQ6ZSG2 479 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 NYAP1Q6ZVC0 841 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 USP37Q86T82 979 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 OGFOD1Q8N543 542 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 ANKS4BQ8N8V4 417 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 TMEM47Q9BQJ4 181 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 BARHL2Q9NY43 387 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 DDX41Q9UJV9 622 aaKnown RBP6.4□□□□□ -1.39
VPS50-220ENST00000544910 PCDHA12Q9UN75 941 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 HPSEQ9Y251 543 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 GDAQ9Y2T3 454 aa6.4□□□□□ -1.39
VPS50-220ENST00000544910 GCNT3O95395 438 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 SETSIPP0DME0 302 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 CETN2P41208 172 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 KIAA0753Q2KHM9 967 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 CCDC174Q6PII3 467 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 ZBTB9Q96C00 473 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 BICD1Q96G01 975 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 UIMC1Q96RL1 719 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 MKRN1Q9UHC7 482 aaKnown RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 CNTNAP5Q8WYK1 1306 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 FAM205CA6NFA0 338 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 NDUFA10O95299 355 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 ERCC3P19447 782 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 PSMD2Q13200 908 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 PLS1Q14651 629 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 GPATCH4Q5T3I0 446 aaKnown RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 ARFGAP2Q8N6H7 521 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 ZFP91Q96JP5 570 aaPredicted RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 PARD6BQ9BYG5 372 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 PPP1R1BQ9UD71 204 aaPredicted RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 MRFAP1Q9Y605 127 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 CAMTA1Q9Y6Y1 1673 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 TMEM110-MUSTN1A8MSY1 372 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 PRCPP42785 496 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 RAD51AP2Q09MP3 1159 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 SEPT2Q15019 361 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 MAN2A1Q16706 1144 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 DOK7Q18PE1 504 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 CERKLQ49MI3 558 aaPredicted RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 PRR16Q569H4 304 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 PPP1R18Q6NYC8 613 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 BARGINQ6ZT62 677 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 GPIHBP1Q8IV16 184 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 CCDC170Q8IYT3 715 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 SUPT20HQ8NEM7 779 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 RIC8AQ9NPQ8 531 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 N4BP2Q86UW6 1770 aaPredicted RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 ITIH6Q6UXX5 1313 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 SCN11AQ9UI33 1791 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 PNMA6FA0A0J9YX94 578 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 TRIM49BA6NDI0 452 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 GOLGA6BA6NDN3 693 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 LGALS16A8MUM7 142 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 H0YIN7 160 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 GCFC2P16383 781 aaKnown RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 GPSM2P81274 684 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 MYCT1Q8N699 235 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 USP17L5A8MUK1 530 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 TEX33O43247 280 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 KCNQ2O43526 872 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 SEMA3FQ13275 785 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 NR1I3Q14994 352 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 CFAP58Q5T655 872 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 KCTD1Q719H9 257 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 SYCE1Q8N0S2 351 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 COA7Q96BR5 231 aa6.39□□□□□ -1.39
VPS50-220ENST00000544910 LIMA1Q9UHB6 759 aaKnown RBP6.39□□□□□ -1.39
VPS50-220ENST00000544910 SPATA31A5Q5VU36 1347 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 SPATA31A7Q8IWB4 1347 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 CNTNAP4Q9C0A0 1308 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 GOLGA6CA6NDK9 693 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 GOLGA6DP0CG33 693 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 ZBED6P86452 979 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 LONRF2Q1L5Z9 754 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 FAM26FQ5R3K3 315 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 C12orf60Q5U649 245 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 VGLL2Q8N8G2 317 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 CCDC26Q8TAB7 109 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 FAM71BQ8TC56 605 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 CCDC113Q9H0I3 377 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS50-220ENST00000544910 NLRC4Q9NPP4 1024 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 GOLGA6AQ9NYA3 693 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 BUB1O43683 1085 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 TNFAIP3P21580 790 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 POLR2FP61218 127 aaKnown RBP6.38□□□□□ -1.39
VPS50-220ENST00000544910 NTRK3Q16288 839 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 RC3H1Q5TC82 1133 aaKnown RBP6.38□□□□□ -1.39
VPS50-220ENST00000544910 SLFN13Q68D06 897 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 FBXO33Q7Z6M2 555 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 ZNF710Q8N1W2 664 aa6.38□□□□□ -1.39
VPS50-220ENST00000544910 DDX12PQ92771 950 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms