RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 HSD17B4P51659 736 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 GJA9P57773 515 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 KRT32Q14532 448 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 SNX17Q15036 470 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 LRRC26Q2I0M4 334 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 MCF2L2Q86YR7 1114 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 FBXL16Q8N461 479 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 SAMD3Q8N6K7 520 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 PIGSQ96S52 555 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 SPZ1Q9BXG8 430 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 LRRC2Q9BYS8 371 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 UPF3AQ9H1J1 476 aaKnown RBP13.28□□□□□ -0.28
YBX3-216ENST00000544622 PRO3102Q9H379 93 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 MAP3K20Q9NYL2 800 aaKnown RBP13.28□□□□□ -0.28
YBX3-216ENST00000544622 COL20A1Q9P218 1284 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 ZHX1Q9UKY1 873 aaPredicted RBP13.28□□□□□ -0.28
YBX3-216ENST00000544622 PHF24Q9UPV7 400 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 MRPL11Q9Y3B7 192 aaKnown RBP13.28□□□□□ -0.28
YBX3-216ENST00000544622 SNX14Q9Y5W7 946 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 SYNRGQ9UMZ2 1314 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 PNMA6FA0A0J9YX94 578 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 REC8O95072 547 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 HMGB1P09429 215 aaKnown RBP13.27□□□□□ -0.29
YBX3-216ENST00000544622 CALM1P0DP23 149 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 CALM2P0DP24 149 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 CALM3P0DP25 149 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 ADCYAP1R1P41586 468 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 IQSEC1Q6DN90 963 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 SLC39A5Q6ZMH5 540 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 RNF180Q86T96 592 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 SRBD1Q8N5C6 995 aaKnown RBP13.27□□□□□ -0.29
YBX3-216ENST00000544622 FANCBQ8NB91 859 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 SYTL5Q8TDW5 730 aaPredicted RBP13.27□□□□□ -0.29
YBX3-216ENST00000544622 NUP133Q8WUM0 1156 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 TSEN34Q9BSV6 310 aaKnown RBP13.27□□□□□ -0.29
YBX3-216ENST00000544622 USP26Q9BXU7 913 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 VTA1Q9NP79 307 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 PDGFCQ9NRA1 345 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 Q9Y3F1 56 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 PCDHA1Q9Y5I3 950 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 NR2E3Q9Y5X4 410 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 MCM3APO60318 1980 aa13.27□□□□□ -0.29
YBX3-216ENST00000544622 MYADML2A6NDP7 307 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 MOXD2PA6NHM9 499 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 CCDC69A6NI79 296 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 KBTBD13C9JR72 458 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 DHX16O60231 1041 aaKnown RBP13.26□□□□□ -0.29
YBX3-216ENST00000544622 SMPD1P17405 629 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 KIF5BP33176 963 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 IRX5P78411 483 aaPredicted RBP13.26□□□□□ -0.29
YBX3-216ENST00000544622 TNFAIP2Q03169 654 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 TMEM63BQ5T3F8 832 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 FBXO16Q8IX29 292 aaPredicted RBP13.26□□□□□ -0.29
YBX3-216ENST00000544622 CTCFLQ8NI51 663 aaPredicted RBP13.26□□□□□ -0.29
YBX3-216ENST00000544622 TCEANC2Q96MN5 208 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 TAAR1Q96RJ0 339 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 LZTS2Q9BRK4 669 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 AGXT2Q9BYV1 514 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 BRPF3Q9ULD4 1205 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 SLC12A7Q9Y666 1083 aa13.26□□□□□ -0.29
YBX3-216ENST00000544622 PLEKHA8P1O95397 391 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 RXRAP19793 462 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 GNAQP50148 359 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 TRAF1Q13077 416 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 KCNA10Q16322 511 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 APOA5Q6Q788 366 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 NFXL1Q6ZNB6 911 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 EEPD1Q7L9B9 569 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 HOMER1Q86YM7 354 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 LRRC37A2A6NM11 1700 aa13.25□□□□□ -0.29
YBX3-216ENST00000544622 BAZ2BQ9UIF8 2168 aaKnown RBP13.24□□□□□ -0.29
YBX3-216ENST00000544622 CFBP00751 764 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 CPA1P15085 419 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 PTGS1P23219 599 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 ACLYP53396 1101 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 RCAN1P53805 252 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 ATN1P54259 1190 aaPredicted RBP13.24□□□□□ -0.29
YBX3-216ENST00000544622 FUT2Q10981 343 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 DUSP28Q4G0W2 176 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 TMTC3Q6ZXV5 915 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 C7orf61Q8IZ16 206 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 CMTR1Q8N1G2 835 aaKnown RBP13.24□□□□□ -0.29
YBX3-216ENST00000544622 NSUN6Q8TEA1 469 aaKnown RBP13.24□□□□□ -0.29
YBX3-216ENST00000544622 IWS1Q96ST2 819 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 RMDN3Q96TC7 470 aa13.24□□□□□ -0.29
YBX3-216ENST00000544622 FAM217BQ9NTX9 383 aaPredicted RBP13.24□□□□□ -0.29
YBX3-216ENST00000544622 COLQQ9Y215 455 aaPredicted RBP13.24□□□□□ -0.29
YBX3-216ENST00000544622 A0A1W2PQ45 241 aaPredicted RBP13.23□□□□□ -0.29
YBX3-216ENST00000544622 A0A1W2PQY0 241 aa13.23□□□□□ -0.29
YBX3-216ENST00000544622 ASGR1P07306 291 aa13.23□□□□□ -0.29
YBX3-216ENST00000544622 EVCP57679 992 aa13.23□□□□□ -0.29
YBX3-216ENST00000544622 PCSK9Q8NBP7 692 aaKnown RBP13.23□□□□□ -0.29
YBX3-216ENST00000544622 FERMT2Q96AC1 680 aa13.23□□□□□ -0.29
YBX3-216ENST00000544622 JAKMIP1Q96N16 626 aaKnown RBP13.23□□□□□ -0.29
YBX3-216ENST00000544622 GDF15Q99988 308 aa13.23□□□□□ -0.29
YBX3-216ENST00000544622 WDR11Q9BZH6 1224 aa13.23□□□□□ -0.29
YBX3-216ENST00000544622 PXMP2Q9NR77 195 aa13.23□□□□□ -0.29
YBX3-216ENST00000544622 ELP1O95163 1332 aa13.22□□□□□ -0.29
YBX3-216ENST00000544622 B4DLN1 442 aa13.22□□□□□ -0.29
YBX3-216ENST00000544622 DYNC1LI2O43237 492 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms