RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 KIF11P52732 1056 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 ZBED6P86452 979 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 SCARF1Q14162 830 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 PUM3Q15397 648 aaKnown RBP15.65■□□□□ 0.1
LIMS1-215ENST00000544547 TAF11Q15544 211 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 PRPF38AQ8NAV1 312 aaKnown RBP15.65■□□□□ 0.1
LIMS1-215ENST00000544547 PPFIBP2Q8ND30 876 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 KIFC2Q96AC6 838 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 HMGB1P1B2RPK0 211 aaPredicted RBP15.65■□□□□ 0.1
LIMS1-215ENST00000544547 SH2B2O14492 632 aaPredicted RBP15.65■□□□□ 0.1
LIMS1-215ENST00000544547 ZNF131P52739 623 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 POLE2P56282 527 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 EHD2Q9NZN4 543 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 RWDD2AQ9UIY3 292 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 LRRD1A4D1F6 860 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 ACTN4O43707 911 aaKnown RBP15.65■□□□□ 0.1
LIMS1-215ENST00000544547 PRKAB2O43741 272 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 HDLBPQ00341 1268 aaKnown RBP15.65■□□□□ 0.1
LIMS1-215ENST00000544547 SLC40A1Q9NP59 571 aa15.65■□□□□ 0.1
LIMS1-215ENST00000544547 TTLL12Q14166 644 aaPredicted RBP15.64■□□□□ 0.1
LIMS1-215ENST00000544547 MUM1Q2TAK8 710 aa15.64■□□□□ 0.1
LIMS1-215ENST00000544547 KRT79Q5XKE5 535 aa15.64■□□□□ 0.1
LIMS1-215ENST00000544547 PROCA1Q8NCQ7 364 aaPredicted RBP15.64■□□□□ 0.1
LIMS1-215ENST00000544547 RASGRP4Q8TDF6 673 aa15.64■□□□□ 0.1
LIMS1-215ENST00000544547 PACSIN2Q9UNF0 486 aaPredicted RBP15.64■□□□□ 0.1
LIMS1-215ENST00000544547 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.64■□□□□ 0.1
LIMS1-215ENST00000544547 MED23Q9ULK4 1368 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 F8W031 263 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 TSPY3P0CV98 308 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 TSPY8P0CW00 308 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 USPL1Q5W0Q7 1092 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 RNPC3Q96LT9 517 aaKnown RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 OSBPL9Q96SU4 736 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 H7C1W4 665 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 CCNT1O60563 726 aaKnown RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 FMNL1O95466 1100 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 ABCB4P21439 1286 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 SATB1Q01826 763 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 ZNF658Q5TYW1 1059 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 LSM14BQ9BX40 385 aaKnown RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 EPN3Q9H201 632 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 MAGOHP61326 146 aaKnown RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 LLGL1Q15334 1064 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 DDB1Q16531 1140 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 CYB5R4Q7L1T6 521 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 CABP7Q86V35 215 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 MAGOHBQ96A72 148 aaKnown RBP15.64■□□□□ 0.09
LIMS1-215ENST00000544547 MS4A14Q96JA4 679 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 ZIM3Q96PE6 472 aa15.64■□□□□ 0.09
LIMS1-215ENST00000544547 CALM1P0DP23 149 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 CALM2P0DP24 149 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 CALM3P0DP25 149 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 EEF1GP26641 437 aaKnown RBP15.63■□□□□ 0.09
LIMS1-215ENST00000544547 TMOD1P28289 359 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 BCAMP50895 628 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 EZH2Q15910 746 aaKnown RBP15.63■□□□□ 0.09
LIMS1-215ENST00000544547 OR2W6PQ8NHA6 318 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 PAX7P23759 505 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 GJC1P36383 396 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 SUGP1Q8IWZ8 645 aaKnown RBP15.63■□□□□ 0.09
LIMS1-215ENST00000544547 SYCP3Q8IZU3 236 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 LPIN2Q92539 896 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 CCDC77Q9BR77 488 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 EHMT1Q9H9B1 1298 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 DMGDHQ9UI17 866 aaKnown RBP15.63■□□□□ 0.09
LIMS1-215ENST00000544547 ASAP1Q9ULH1 1129 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 TNKSO95271 1327 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 UBE2Q2LH0YL09 131 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 IFNAR1P17181 557 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 PRCPP42785 496 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 CAPRIN2Q6IMN6 1127 aaKnown RBP15.63■□□□□ 0.09
LIMS1-215ENST00000544547 KCNB2Q92953 911 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 STMN2Q93045 179 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 RAB21Q9UL25 225 aa15.63■□□□□ 0.09
LIMS1-215ENST00000544547 TARSL2A2RTX5 802 aaKnown RBP15.62■□□□□ 0.09
LIMS1-215ENST00000544547 GUCY1A2P33402 732 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 ERVK-24P63145 666 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 PDIA6Q15084 440 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 FOXP4Q8IVH2 680 aaPredicted RBP15.62■□□□□ 0.09
LIMS1-215ENST00000544547 ATP6V1G3Q96LB4 118 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 VCXQ9H320 206 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 GPR108Q9NPR9 543 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 DUSP10Q9Y6W6 482 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 GNAT2P19087 354 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 ALDH3A1P30838 453 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 INF2Q27J81 1249 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 C6orf163Q5TEZ5 329 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 TAOK1Q7L7X3 1001 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 NOP53Q9NZM5 478 aaKnown RBP15.62■□□□□ 0.09
LIMS1-215ENST00000544547 KLHL14Q9P2G3 628 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 PHF20L1A8MW92 1017 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 STX2P32856 288 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 MDH1P40925 334 aaKnown RBP15.62■□□□□ 0.09
LIMS1-215ENST00000544547 TNNI2P48788 182 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 GNAQP50148 359 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 FAM47AQ5JRC9 791 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 CCDC13Q8IYE1 715 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 GPKOWQ92917 476 aaPredicted RBP eCLIP15.62■□□□□ 0.09
LIMS1-215ENST00000544547 PDE8AO60658 829 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 PLTPP55058 493 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms