RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 SMPD1P17405 629 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 ITGB8P26012 769 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 CALML3P27482 149 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 BEX3Q00994 111 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 PDE4DQ08499 809 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 DUSP28Q4G0W2 176 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 BRDTQ58F21 947 aaPredicted RBP15.36■□□□□ 0.05
RTN3-212ENST00000543123 MFSD5Q6N075 450 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 TAPT1Q6NXT6 567 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 EEPD1Q7L9B9 569 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 FAM126BQ8IXS8 530 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 TMEM199Q8N511 208 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 DNERQ8NFT8 737 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 ZSCAN10Q96SZ4 725 aaPredicted RBP15.36■□□□□ 0.05
RTN3-212ENST00000543123 ZKSCAN3Q9BRR0 538 aa15.36■□□□□ 0.05
RTN3-212ENST00000543123 B4E1Z4 1266 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 CPT1AP50416 773 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 IRX5P78411 483 aaPredicted RBP15.35■□□□□ 0.05
RTN3-212ENST00000543123 CXCL17Q6UXB2 119 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 SLC30A10Q6XR72 485 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 RGS22Q8NE09 1264 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 RUFY2Q8WXA3 655 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 CLEC4DQ8WXI8 215 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 ANKS1AQ92625 1134 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 WDR11Q9BZH6 1224 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 POLR3EQ9NVU0 708 aa15.35■□□□□ 0.05
RTN3-212ENST00000543123 NKRFO15226 690 aaKnown RBP eCLIP15.34■□□□□ 0.05
RTN3-212ENST00000543123 RPS6P62753 249 aaKnown RBP15.34■□□□□ 0.05
RTN3-212ENST00000543123 TRDNQ13061 729 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 ITGA7Q13683 1181 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 USH1GQ495M9 461 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 PSRC1Q6PGN9 363 aaPredicted RBP15.34■□□□□ 0.05
RTN3-212ENST00000543123 ENAHQ8N8S7 591 aaPredicted RBP15.34■□□□□ 0.05
RTN3-212ENST00000543123 SLC43A3Q8NBI5 491 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 SCFD2Q8WU76 684 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 PDGFCQ9NRA1 345 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 SUPT16HQ9Y5B9 1047 aaKnown RBP15.34■□□□□ 0.05
RTN3-212ENST00000543123 LCTP09848 1927 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 TNKSO95271 1327 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 ABCB11O95342 1321 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 UNC80Q8N2C7 3258 aa15.34■□□□□ 0.05
RTN3-212ENST00000543123 CDH23Q9H251 3354 aa15.33■□□□□ 0.05
RTN3-212ENST00000543123 RBM47A0AV96 593 aaKnown RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 DHX16O60231 1041 aaKnown RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 CD4P01730 458 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 PARP1P09874 1014 aaKnown RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 GOLGA8HP0CJ92 632 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 EPHB4P54760 987 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 PPP2R5BQ15173 497 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 CDC37Q16543 378 aaPredicted RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 IFIT1BQ5T764 474 aaKnown RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 TTC22Q5TAA0 569 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 MCF2L2Q86YR7 1114 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 FAM161BQ96MY7 647 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 GUCD1Q96NT3 240 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 PURBQ96QR8 312 aaKnown RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 MTIF3Q9H2K0 278 aaKnown RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 GPHNQ9NQX3 736 aaPredicted RBP15.33■□□□□ 0.04
RTN3-212ENST00000543123 ZSWIM5Q9P217 1185 aa15.33■□□□□ 0.04
RTN3-212ENST00000543123 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.32■□□□□ 0.04
RTN3-212ENST00000543123 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.32■□□□□ 0.04
RTN3-212ENST00000543123 KPNA6O60684 536 aa15.32■□□□□ 0.04
RTN3-212ENST00000543123 EDNRBP24530 442 aa15.32■□□□□ 0.04
RTN3-212ENST00000543123 OR6J1Q8NGC5 347 aa15.32■□□□□ 0.04
RTN3-212ENST00000543123 PPP1R12CQ9BZL4 782 aa15.32■□□□□ 0.04
RTN3-212ENST00000543123 UBA5Q9GZZ9 404 aa15.32■□□□□ 0.04
RTN3-212ENST00000543123 HIPK3Q9H422 1215 aa15.32■□□□□ 0.04
RTN3-212ENST00000543123 DDX49Q9Y6V7 483 aaKnown RBP15.32■□□□□ 0.04
RTN3-212ENST00000543123 SUPT20HL2P0C7V6 817 aa15.31■□□□□ 0.04
RTN3-212ENST00000543123 TRAF1Q13077 416 aa15.31■□□□□ 0.04
RTN3-212ENST00000543123 TTLL4Q14679 1199 aa15.31■□□□□ 0.04
RTN3-212ENST00000543123 ADGRF4Q8IZF3 695 aa15.31■□□□□ 0.04
RTN3-212ENST00000543123 SEMA6BQ9H3T3 888 aa15.31■□□□□ 0.04
RTN3-212ENST00000543123 MRPL11Q9Y3B7 192 aaKnown RBP15.31■□□□□ 0.04
RTN3-212ENST00000543123 U3KPZ7 1027 aaPredicted RBP15.31■□□□□ 0.04
RTN3-212ENST00000543123 ERICH2A1L162 156 aa15.3■□□□□ 0.04
RTN3-212ENST00000543123 CSF2RAP15509 400 aa15.3■□□□□ 0.04
RTN3-212ENST00000543123 SART3Q15020 963 aaKnown RBP15.3■□□□□ 0.04
RTN3-212ENST00000543123 FBXO11Q86XK2 927 aa15.3■□□□□ 0.04
RTN3-212ENST00000543123 NSUN6Q8TEA1 469 aaKnown RBP15.3■□□□□ 0.04
RTN3-212ENST00000543123 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.3■□□□□ 0.04
RTN3-212ENST00000543123 MTG1Q9BT17 334 aaPredicted RBP15.3■□□□□ 0.04
RTN3-212ENST00000543123 MYL3P08590 195 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 TXNP10599 105 aaKnown RBP15.29■□□□□ 0.04
RTN3-212ENST00000543123 GSPT1P15170 499 aaKnown RBP15.29■□□□□ 0.04
RTN3-212ENST00000543123 DNAJB2P25686 324 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 PDE4AP27815 886 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 CYP2C18P33260 490 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 PURAQ00577 322 aaKnown RBP15.29■□□□□ 0.04
RTN3-212ENST00000543123 QRICH1Q2TAL8 776 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 TMEM240Q5SV17 173 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 RALYLQ86SE5 291 aaKnown RBP15.29■□□□□ 0.04
RTN3-212ENST00000543123 IWS1Q96ST2 819 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 CDX2Q99626 313 aaPredicted RBP15.29■□□□□ 0.04
RTN3-212ENST00000543123 AMNQ9BXJ7 453 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 ALDH8A1Q9H2A2 487 aaPredicted RBP15.29■□□□□ 0.04
RTN3-212ENST00000543123 CPVLQ9H3G5 476 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 IL23AQ9NPF7 189 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 EYSQ5T1H1 3165 aa15.29■□□□□ 0.04
RTN3-212ENST00000543123 GRIN2DO15399 1336 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms