RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 SALL1Q9NSC2 1324 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 TRIM64CA6NLI5 447 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 GNAT1P11488 350 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 DMPKQ09013 629 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 EZH2Q15910 746 aaKnown RBP12.34□□□□□ -0.43
CDH3-203ENST00000542274 SLC4A8Q2Y0W8 1093 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.34□□□□□ -0.43
CDH3-203ENST00000542274 ZSCAN25Q6NSZ9 544 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 FAM117BQ6P1L5 589 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 CATIPQ7Z7H3 387 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 PEX5LQ8IYB4 626 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 NCOA7Q8NI08 942 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 ERMNQ8TAM6 284 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 FUT8Q9BYC5 575 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 L2HGDHQ9H9P8 463 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 UNCXA6NJT0 531 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 PARP1P09874 1014 aaKnown RBP12.33□□□□□ -0.44
CDH3-203ENST00000542274 UQCRFS1P1P0C7P4 283 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 FERP16591 822 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 FUT4P22083 530 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 ADD1P35611 737 aaKnown RBP12.33□□□□□ -0.44
CDH3-203ENST00000542274 FNTAP49354 379 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 CUL3Q13618 768 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 TTF1Q15361 905 aaPredicted RBP12.33□□□□□ -0.44
CDH3-203ENST00000542274 UBE3CQ15386 1083 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 CNNM3Q8NE01 707 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 MORC4Q8TE76 937 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 GPR101Q96P66 508 aaPredicted RBP12.33□□□□□ -0.44
CDH3-203ENST00000542274 KLC4Q9NSK0 619 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 DACT1Q9NYF0 836 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 POLRMTO00411 1230 aaKnown RBP12.33□□□□□ -0.44
CDH3-203ENST00000542274 NR1I2O75469 434 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 FGFR1OPO95684 399 aaKnown RBP12.33□□□□□ -0.44
CDH3-203ENST00000542274 CLPPQ16740 277 aaPredicted RBP12.33□□□□□ -0.44
CDH3-203ENST00000542274 CCDC73Q6ZRK6 1079 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 ANKK1Q8NFD2 765 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 ZKSCAN3Q9BRR0 538 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 EXOC1Q9NV70 894 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 SEL1LQ9UBV2 794 aa12.33□□□□□ -0.44
CDH3-203ENST00000542274 A0A087WWV3 80 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 ANKRD62A6NC57 917 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 DESP17661 470 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 SDR42E1Q8WUS8 393 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 ZNF274Q96GC6 653 aaPredicted RBP12.32□□□□□ -0.44
CDH3-203ENST00000542274 USP28Q96RU2 1077 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 FAN1Q9Y2M0 1017 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 ERICH2A1L162 156 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 PDLIM1O00151 329 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 SMNDC1O75940 238 aaKnown RBP eCLIP12.32□□□□□ -0.44
CDH3-203ENST00000542274 MCCD1P59942 119 aaPredicted RBP12.32□□□□□ -0.44
CDH3-203ENST00000542274 EVX2Q03828 476 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 IFNL3Q8IZI9 196 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 SLC7A5P1Q8MH63 180 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 CEP112Q8N8E3 955 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 FUCA2Q9BTY2 467 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 ARFGAP3Q9NP61 516 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 AATFQ9NY61 560 aaKnown RBP eCLIP12.32□□□□□ -0.44
CDH3-203ENST00000542274 LRP2BPQ9P2M1 347 aa12.32□□□□□ -0.44
CDH3-203ENST00000542274 COL1A1P02452 1464 aaPredicted RBP12.32□□□□□ -0.44
CDH3-203ENST00000542274 GSG1L2A8MUP6 293 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 EBAG9O00559 213 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 POLR3DP05423 398 aaPredicted RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 GNPTABQ3T906 1256 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 MICU3Q86XE3 530 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 TMCO5AQ8N6Q1 288 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 GABPB2Q8TAK5 448 aaPredicted RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 PHKBQ93100 1093 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 CENPHQ9H3R5 247 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 ZC3H4Q9UPT8 1303 aaKnown RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 CDC27P30260 824 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 MAP3K12Q12852 859 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 TXNRD3Q86VQ6 643 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 C1orf131Q8NDD1 294 aaKnown RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 RPGRQ92834 1020 aaKnown RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 PMM1Q92871 262 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 VTI1AQ96AJ9 217 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 TSC22D3Q99576 134 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 LLPHQ9BRT6 129 aaKnown RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 RSPH9Q9H1X1 276 aaPredicted RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 PNPLA7Q6ZV29 1317 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 ANKRD31Q8N7Z5 1873 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 MYH13Q9UKX3 1938 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 GOLGA6L4A6NEF3 574 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 CCT5P48643 541 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 VPS37AQ8NEZ2 397 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 DDX12PQ92771 950 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 JAKMIP2Q96AA8 810 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 NAPBQ9H115 298 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 PDE11AQ9HCR9 933 aa12.31□□□□□ -0.44
CDH3-203ENST00000542274 BZW2Q9Y6E2 419 aaKnown RBP12.31□□□□□ -0.44
CDH3-203ENST00000542274 CYP2D7A0A087X1C5 515 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 ZNF132P52740 706 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 BZW1Q7L1Q6 419 aaKnown RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 DEFB132Q7Z7B7 95 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 UBE2Q1Q7Z7E8 422 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 SCAND2PQ9GZW5 306 aaPredicted RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 HOXC10Q9NYD6 342 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 MYO1AQ9UBC5 1043 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 SLC4A4Q9Y6R1 1079 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 DOCK2Q92608 1830 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms