RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 KIF22Q14807 665 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 DAB2IPQ5VWQ8 1189 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 DTX3LQ8TDB6 740 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 OTUD7AQ8TE49 926 aaPredicted RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 TRIM55Q9BYV6 548 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 VCPKMTQ9H867 229 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 SPDYE3A6NKU9 549 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 SYCE1LA8MT33 242 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 CFLARO15519 480 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 NDUFA8P51970 172 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 USP14P54578 494 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 VSNL1P62760 191 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 ME3Q16798 604 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 CASC4Q6P4E1 433 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 AGGF1Q8N302 714 aaeCLIP9.51□□□□□ -0.89
YBX3-208ENST00000540447 MYD88Q99836 296 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 CRNKL1Q9BZJ0 848 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 NCOA5Q9HCD5 579 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 POTEB3A0JP26 581 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 RHOBTB1O94844 696 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 KLC3Q6P597 504 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 POTEBQ6S5H4 581 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 RINLQ6ZS11 566 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 TRIM74Q86UV6 250 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 TRIM73Q86UV7 250 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 PHACTR3Q96KR7 559 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 MOV10L1Q9BXT6 1211 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 SUCLA2Q9P2R7 463 aaPredicted RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 CD2BP2O95400 341 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 PYGBP11216 843 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 CMA1P23946 247 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 HORMAD1Q86X24 394 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 RETREG2Q8NC44 543 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 ING2Q9H160 280 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 UPF3AQ9H1J1 476 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 MMADHCQ9H3L0 296 aaPredicted RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 IL1RAPL1Q9NZN1 696 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 ZBTB21Q9ULJ3 1066 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 RXRAP19793 462 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 COPB1P53618 953 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 IGBP1P78318 339 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 KIF23Q02241 960 aaPredicted RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 SPARCL1Q14515 664 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 RARS2Q5T160 578 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 LSM14BQ9BX40 385 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 IMPG2Q9BZV3 1241 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 PTPN22Q9Y2R2 807 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 NLRP6P59044 892 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 CCDC144BQ3MJ40 725 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 TOGARAM2Q6ZUX3 1019 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 CFAP36Q96G28 342 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 BLZF1Q9H2G9 400 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 KCNF1Q9H3M0 494 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 RGS12O14924 1447 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 MOCS3O95396 460 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 MRPS25P82663 173 aaKnown RBP9.5□□□□□ -0.89
YBX3-208ENST00000540447 ZCWPW2Q504Y3 356 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 ZNF530Q6P9A1 599 aaPredicted RBP9.5□□□□□ -0.89
YBX3-208ENST00000540447 TRPV6Q9H1D0 765 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 PPARGC1AQ9UBK2 798 aaKnown RBP9.5□□□□□ -0.89
YBX3-208ENST00000540447 USTQ9Y2C2 406 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 SGSM2O43147 1006 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 AHCYL1O43865 530 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 PDHBP11177 359 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 LSP1P33241 339 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 VHLP40337 213 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 SLC26A7Q8TE54 656 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 EHMT1Q9H9B1 1298 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 STMN3Q9NZ72 180 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 DDHD2O94830 711 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 INHBAP08476 426 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 STX3Q13277 289 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 IQCB1Q15051 598 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 ZNF827Q17R98 1081 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 CC2D2BQ6DHV5 1058 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 RFX8Q6ZV50 586 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 CATSPER1Q8NEC5 780 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 KIFC2Q96AC6 838 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 STX18Q9P2W9 335 aaKnown RBP9.5□□□□□ -0.89
YBX3-208ENST00000540447 PCDHA7Q9UN72 937 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 H7C1D1 291 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 NCF2P19878 526 aaPredicted RBP9.5□□□□□ -0.89
YBX3-208ENST00000540447 ABCB4P21439 1286 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 EVA1CP58658 441 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 DZIP3Q86Y13 1208 aaKnown RBP9.5□□□□□ -0.89
YBX3-208ENST00000540447 WDR60Q8WVS4 1066 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 RPGRQ92834 1020 aaKnown RBP9.5□□□□□ -0.89
YBX3-208ENST00000540447 PBKQ96KB5 322 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 BTBD7Q9P203 1132 aa9.5□□□□□ -0.89
YBX3-208ENST00000540447 RAD54L2Q9Y4B4 1467 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 GPC4O75487 556 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 IFNB1P01574 187 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 CA4P22748 312 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 BTKQ06187 659 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 CNGA3Q16281 694 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DDX42Q86XP3 938 aaKnown RBP eCLIP9.49□□□□□ -0.89
YBX3-208ENST00000540447 ESR2Q92731 530 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 TRIM63Q969Q1 353 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 CYFIP2Q96F07 1278 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 TARSL2A2RTX5 802 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms